Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hhal_0413 |
Symbol | |
ID | 4711540 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorhodospira halophila SL1 |
Kingdom | Bacteria |
Replicon accession | NC_008789 |
Strand | - |
Start bp | 481178 |
End bp | 481681 |
Gene Length | 504 bp |
Protein Length | 167 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 639854872 |
Product | DNA mismatch endonuclease vsr |
Protein accession | YP_001002005 |
Protein GI | 121997218 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3727] DNA G:T-mismatch repair endonuclease |
TIGRFAM ID | [TIGR00632] DNA mismatch endonuclease Vsr |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.23201 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAGCGACA GGCTCTCTCC GGAACATCGC AGCCGGGTAA TGAGCCGGGT GCGCGGGCAC GACACGAAGC CCGAGCTCGT CCTGCGCCGC GCGCTCCATG CGCGGGGCTT CCGATACAGA CTCCATGTAC GCGACCTCCC CGGATGCCCC GATCTCGTTT TCCCTCGGTA TTCGGCGGTG GTGTTCGTTC ACGGATGTTT CTGGCATGGG CATGACTGCC ACCTTTTCCG CATGCCCTCA ACCCGCGAGG AGTTCTGGGA AAAAAAGATC GGACGCAATC GGGAACGCGA CCGGAAAAAT CGGGCCGAAC TGCTTGATCG CGGGTGGCGC GTCTTGGAAG TTTGGGAATG CGCGATGAGA GGGAAGGATC GTCTTCCATC CGGTGAAATG CTTGAAAGGG TGGAGACATG GCTGACCGGC CGTACAGTTA CCCATGAGAT CCGCGGTCTT GGGGGGCGGC ACCCGGGGGC GAACGACGAC AGTATTTATG GGGAGCAGGC GTAG
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Protein sequence | MSDRLSPEHR SRVMSRVRGH DTKPELVLRR ALHARGFRYR LHVRDLPGCP DLVFPRYSAV VFVHGCFWHG HDCHLFRMPS TREEFWEKKI GRNRERDRKN RAELLDRGWR VLEVWECAMR GKDRLPSGEM LERVETWLTG RTVTHEIRGL GGRHPGANDD SIYGEQA
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