| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_0361 |
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| Symbol | |
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| ID | 4711351 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | - |
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| Start bp | 419270 |
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| End bp | 421885 |
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| Gene Length | 2616 bp |
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| Protein Length | 871 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 639854824 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_001001957 |
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| Protein GI | 121997170 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.363033 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCGAT CCGAGCAGTC CGAGGCGCAG CGGCTGTACA CCCGCATGTT CACCGAGCAT
GTCGCGGTTC AGCTGCTCAT CGATCCCGAG ACCGGCGCCA TCCTCGACGC CAACCCCAGT
GCCGTGCGCT TCTACGGGTA CCCTCGGGAG GAGCTCTGCG GCATGCGGAT CCAGCAGATC
AATACCTTGG ACGAGCCGCA AGTGCGCGCC GAAATGGCCC GCGCCCGGGC CGAGCAGCGG
CGCTACTTCC GCTTCCAGCA CCGCTTGTGC GGCGGCGAAG TCCGGGACGT CGAGGTCTAC
AGCGGGCCGC TGGAGCTCGC CGGACGGCAG TACCTTCACT CCATCATCCA CGACATCACC
GATACACGCC GCTATCAGCG CCGCCTGGAG GTCTTCCACG ATCTATTCCG CTCCCTGCCG
GTGGGCATCT ACCGCAACAC CCCCGGGCCT TCGGGGCGTT TCCTTGAGGT CAACCCGGCG
ATGGTCGAGC TCTTCGAGGC CGAGAGCGAG GCGCAGCTGC TGGCGACGCC GGTCGCGGCG
CTCTACCGGG ACCCGGAACG CCGGGCCGAG ATCAGTGCCC TGATCGAGCG CGAAGGCTCC
GTGAGCTGGG CGGAGCTCCA GGCCCGGACG CTGCGCGGTC GGCCGCTCTG GCTGCGGCTT
TCAGTGCGGC GGGTGGAGGA TGAGCACGGG CGGACGGTAT TCGACGGCAT GGTCGAGGAT
ATCTCGGCCC ACGTCCGCCT GCAGGGTGAG CGGGATCGCC TGCTCGAGGC CATCAACGAA
GGGGTGTGCG GGCTCGATGA CGCCGGGCGT TTCACCTTCC TCAACCCCGC CGCCCGGCAG
TTGCTCGGGT TTGCCTCCGA GGAGGCCGCC CTCGGCCGGG AGGCCCACGC GCTGACGCAC
CATAGCCGTC CGGACGGCAC CCCGTATCCG CTGGAGGAAT GTCCGATTTT CCGGGTGCTG
CGCAGCGGCG AGCCCTTGGA GGCGTGGCAG GACTACTTCT GGCGGACCGA CGGCCGGGGC
TTCGATGTGC TGGTTTACGC CGCCCCGCTG CGCGATGTGG AGGGCGGGAT CACCGGCATT
GTGCTCTCCT TCCAGGACAT CAGCCGGCGC AGGCGCATCG AGCGCGAGCG CGATCAGATG
CTGGAGATCC TCGACCACCA CCCGCACCTG ATCCAGCGCT TCCTGCCGGA TACCACGCTG
CTCTACGCCA ACCGCATGGT GGCCGAGCTG TTCGGGATCC CGCCGCCGCA GATGGACGGC
CGGCGCTGGA TCGAGTGGCT CGGGCCGGAG GCGCGCGAGC AGCTGGAGGC CTTCCTGTGC
CGCTTCACCC GGGCGGCGCC GGTGGGCACC GTGCAGCTCG CGGTGCTCGC CGCCACAGGG
GAGCAGCGCC GGGTGCAGTG GACCTGCCAG GCCTTCTTCG ATGAGGACGG ACTGATCAGC
CACTTCCAGG CCGTGGGCAT CGACATCACC GAGCAGGTCG CGGCCGAGCG GGCGCGCGCC
CAGGCCGACC GCGATCGACG AACCTTCCTC GCGGCGGTCA GCCACGATCT GCGCACGCCC
CTCAATGCCA TCTACGGCTT CACTGATTTG CTCCAGGCCA CGGAGCTGAC CCCGCAGCAG
CGCGAATACC TCGGGTTGTG CCGTAGCGCC AGCGAGAAGC TGCTGGCACT GATCGACACC
CTGCTCGATC TCTCGCGCAT GGAGTCGGGG CGGCTGACCC TGCACGACGA GCCCTTCGAG
CTGGCGGAGG TCGTGGAGCG CCAGGTGGCG GTGCTGCGGG CCGTCGCCGA GGAGGCCGGA
CTGCGCCTCA CCGTCCGGGA GGCGCCGGGC ACGCCGCAAT GGGTGCGGGG CGACGCCACC
CGCTTCGGCC AGGTCGTGCA TAACCTGATC AGCAACGCCA TCCAGTTCAC CGAGCACGGC
GAGGTGGTGC TGGAGGTGGC GCCCGAGGGC AGCGGTTGGC TCTACGTGGC GGTCCACGAC
ACCGGGGTGG GGATCGCCCC GGAGGATCGG GAGCACATCT TCAAGGCGTT TGCCCAGGGG
AACCCGTCGT TCCGGCGCCA GCCCGGCAAC GGCCTGGGGC TGCGGATCTG CCAGGAGTTG
GTGCGGCTGA TGGGCGGGCG GTTGGAGATG ACCAGCGAGC TGGGCAAGGG GTCCACCTTC
TATTTCACGG CGCGTCTGCC CCGCGTGGAG CCGCCGCAGG CGGCGTTCGA GGCGACGCCC
GAGCCCCACC GCACGACCCA TCTGCGCGTC CTGGTGGCCG AGGATGACCC CACCAACGCC
CTGCTCATCC AGGCGCAGCT GGAGCTCGCC GGGGTGACCC CGACCCTGGT GGAGGACGGC
CGCCAGGCGG TGGACGCCTG GCAGGAGCAG GACTGGGACC TGGTGCTCAT GGACGTACAA
ATGCCCGAGG TTGACGGTCC GGATGCGGTG CGCACCATTC GCGCCCGCGA GGCCGAGCGC
GGCCGAGCCC GCACCCTGAT CATCGCCCTG AGCGCCCACG CCGTCGATCA GGTCCGCGAG
GAGTGCCTGG AAGCCGGCTG CGACGAGTAC CTGACCAAGC CGGTGGACCG GCAACGGCTG
GCGGCCCTGC TGGCCGGGAT CGCCGGCCGC GACTGA
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| Protein sequence | MNRSEQSEAQ RLYTRMFTEH VAVQLLIDPE TGAILDANPS AVRFYGYPRE ELCGMRIQQI
NTLDEPQVRA EMARARAEQR RYFRFQHRLC GGEVRDVEVY SGPLELAGRQ YLHSIIHDIT
DTRRYQRRLE VFHDLFRSLP VGIYRNTPGP SGRFLEVNPA MVELFEAESE AQLLATPVAA
LYRDPERRAE ISALIEREGS VSWAELQART LRGRPLWLRL SVRRVEDEHG RTVFDGMVED
ISAHVRLQGE RDRLLEAINE GVCGLDDAGR FTFLNPAARQ LLGFASEEAA LGREAHALTH
HSRPDGTPYP LEECPIFRVL RSGEPLEAWQ DYFWRTDGRG FDVLVYAAPL RDVEGGITGI
VLSFQDISRR RRIERERDQM LEILDHHPHL IQRFLPDTTL LYANRMVAEL FGIPPPQMDG
RRWIEWLGPE AREQLEAFLC RFTRAAPVGT VQLAVLAATG EQRRVQWTCQ AFFDEDGLIS
HFQAVGIDIT EQVAAERARA QADRDRRTFL AAVSHDLRTP LNAIYGFTDL LQATELTPQQ
REYLGLCRSA SEKLLALIDT LLDLSRMESG RLTLHDEPFE LAEVVERQVA VLRAVAEEAG
LRLTVREAPG TPQWVRGDAT RFGQVVHNLI SNAIQFTEHG EVVLEVAPEG SGWLYVAVHD
TGVGIAPEDR EHIFKAFAQG NPSFRRQPGN GLGLRICQEL VRLMGGRLEM TSELGKGSTF
YFTARLPRVE PPQAAFEATP EPHRTTHLRV LVAEDDPTNA LLIQAQLELA GVTPTLVEDG
RQAVDAWQEQ DWDLVLMDVQ MPEVDGPDAV RTIRAREAER GRARTLIIAL SAHAVDQVRE
ECLEAGCDEY LTKPVDRQRL AALLAGIAGR D
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