Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hhal_0326 |
Symbol | |
ID | 4711080 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorhodospira halophila SL1 |
Kingdom | Bacteria |
Replicon accession | NC_008789 |
Strand | - |
Start bp | 368318 |
End bp | 370156 |
Gene Length | 1839 bp |
Protein Length | 612 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 639854786 |
Product | type II secretion system protein E |
Protein accession | YP_001001922 |
Protein GI | 121997135 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.038954 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACGGC AGAAGATTCG CCTCGGCGAT CTGCTCATCA AGCGCGGGGT GATCACCCAG GCGCAGATGC AGCAGGCCCT GGAAGCGCAG AAGCAGAGCG GCCGCAAGCT CGGTGCGCAG CTCATCGCCA TGGACTTCGT CACCGAGGAC CGGATCCTCG CCGAACTCTC CCAGCAGCTC GACGTGCCGT GGGTCAACCC CAACGACTAC TGGGTGGACC CGGATGTCGC CAGCAAACTG CCGGAGAGCT ACGCCCGGCG CTTCTCCGCG CTGATCCTCG AGGAGACCGA GACCGACTTC CTGGTGGCCA TGGCCGACCC CAGCGATCTC ATCGCCTACG ACGAGATCAC CCGGGTCCTG CGCTGCCCGG TGCGCCTGGC CGTGGCCCGC GAGAAGACTC TCCAGGAGCT GATCAACCTC GTCTACCGCC GCACCGACGA GATCAGCAAC ATCGCCGAGG AGCTCGGCCG CGAGATCACC AGCGCCGACG ACATCGACCT CTCCACCCTG CCGGTGGGCG AGGGCGGCGC CAGCGCCCCG GTGGTCCGGC TGCTCCAGTC GCTGTTCGAG GACGCGGTGC AGGTGGGCGC CTCGGACATC CACATCGAGC CGGACGAGCA ATCCCTGCGC ATCCGCATCC GCCGCGACGG CGTCCTGCAG GAGCAGCTCT TTCGCCAGCG CAATATCCAC GCCGCCATGG TCTCGCTGCT CAAGCTCATG TGCGGGCTGA ATATCACCGA GCGCCGCCTG CCCCAGGATG GCCGCTTCCA GGTCCGCGTC CACGGCCGCA GCATCGATGT GCGCCTGTCG ACCCTGCCGC TGCAGCACGG CGAGGGCGTG GTCATGCGCC TGCTCGACCA CAGCGCCGGG GTCAGCTCAC TGGATCAGAC CGGCATGCCG GCCGACATCC TTCAGCGCCT GCGCCGGCTG ATCAAGATGC CCTACGGCAT GGTGCTGGTC ACCGGCCCCA CCGGTTCCGG CAAGTCCACC ACGCTCTACG GGGCGCTGTC CGAGATCAAC CGCCCCGAGG TCAAGGTCAT CACCGTCGAG GACCCGGTGG AGTACCGCCT GCCGCGGGTC AACCAGGTTC ATGTCCGCGA GAGCATCGGG CTGACCTTCG CCCGCGTGCT GCGCACCACC CTCCGCCAGG ACCCGGACAT CATCATGGTC GGCGAGATGC GCGACGAGGA GACCGCCGAC ATCGGCTTCC GCGCCGCCAT CACCGGCCAC CTGGTCTTCT CAACGCTGCA CACCAACGAC GCCGTCTCCA CCGCCAACCG CCTGGTGGAT ATGGGCGTAG AGCCGTACAT GATCGCCGCC GGCCTGCGCG CCGTGCTCGC CCAGCGCCTG CTGCGGCGGA TCTGCACCCA GTGCCGCGAG CCCTACACCC CGGACGCCAG CGAACGGGCC TGGCTGCGCA CCATCTTCGG CGCCGACGAG ACGGAATCCC TGTCGCTCTA CCAGGGCCGG GGCTGCGCCA GCTGCAGCAA GACCGGCTAC AGCGGCCGCA TCGGCGTCTT CGAACTGTTG GAGATGGACG CCGATAAGAT CGACGCCCTG CGCCGCGGCG ACCAGTCCGG GTTCGCCGCC GCCTGCCACG CCGACCTCAG CTACGAGCCC ATGAGCCGGG TGGCCCTGCG CTACGCCCGC GAGGGCATCA CCACCCTCCA GGAGGTCTCC CGCGTCCTCG GCGAGGCCGA CGAGAGCGCC CTGCGCGATG AGGTCCGGGC CGTGCGCGAG GCGGCGCCGA CGGACCCCTC CGAGGCGGAG GGGGTGCTCA ACGACCCGGC GTCCACGGAC ACCGACAGCG CCTCGACCGA GGCGTGGCGC CAGGGCTAG
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Protein sequence | MKRQKIRLGD LLIKRGVITQ AQMQQALEAQ KQSGRKLGAQ LIAMDFVTED RILAELSQQL DVPWVNPNDY WVDPDVASKL PESYARRFSA LILEETETDF LVAMADPSDL IAYDEITRVL RCPVRLAVAR EKTLQELINL VYRRTDEISN IAEELGREIT SADDIDLSTL PVGEGGASAP VVRLLQSLFE DAVQVGASDI HIEPDEQSLR IRIRRDGVLQ EQLFRQRNIH AAMVSLLKLM CGLNITERRL PQDGRFQVRV HGRSIDVRLS TLPLQHGEGV VMRLLDHSAG VSSLDQTGMP ADILQRLRRL IKMPYGMVLV TGPTGSGKST TLYGALSEIN RPEVKVITVE DPVEYRLPRV NQVHVRESIG LTFARVLRTT LRQDPDIIMV GEMRDEETAD IGFRAAITGH LVFSTLHTND AVSTANRLVD MGVEPYMIAA GLRAVLAQRL LRRICTQCRE PYTPDASERA WLRTIFGADE TESLSLYQGR GCASCSKTGY SGRIGVFELL EMDADKIDAL RRGDQSGFAA ACHADLSYEP MSRVALRYAR EGITTLQEVS RVLGEADESA LRDEVRAVRE AAPTDPSEAE GVLNDPASTD TDSASTEAWR QG
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