Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hhal_0057 |
Symbol | |
ID | 4710354 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorhodospira halophila SL1 |
Kingdom | Bacteria |
Replicon accession | NC_008789 |
Strand | + |
Start bp | 63692 |
End bp | 66202 |
Gene Length | 2511 bp |
Protein Length | 836 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639854515 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
Protein accession | YP_001001654 |
Protein GI | 121996867 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGACGAG GAGGGGATTA CGGGCGGCCA TCGGTTATCC CCGGCAGCAT CGCAGGTCGA TACCCCGTCG GCGGGCAGAC CTGGCTGGCG GCACTTGATG CCATCGAGGT GCCGATCTTC ATCCACGACG CCGAACACCG GGTCATCGAG GCCAACCGGG CCTACTACCA GCAGGCTGGC CTGGCCCCCG AGGAGATCCT CGGCCGCCCC TACTATGAGA TCTTCCCCCT GTGCGACGGT CCCCTACCCG GCTGCCGTCA CGGACTCCAG GCCGCTCACC CCGAGGGCGA CGAAGCCTCC CCAACAAGCA GCGAGGCGGT GGAGGAGTAC TTCACCACCG ATGCTGGCCA TACCTTCCTG TCGCGTTCTT TCACCGTCCA TGATGAGGAT GGTGCCTACC GGCACTCAGT GCACATCCTC GAGAACATCA CCCGGCGCCG CCGTGCCGAA CAGGACCAGA AGCGGATCCA CCAGGCGCTG CTTGAGCGGG AGGAGCAGCT CCACCGGCTG TTCGAGAACA TGACTGAGGG CGTCTTGGTG GTCACGCCCG ACGGTACTGT GCGTTACGCC AACCCGAGTG CTGCGAACCT CTTTGCCCGG GACAGTACGG CCTTGATTGG CGCGGTGATC GGCCTGCCGA TCGGTGGACC GGATGCTCAG GAGATCGGGC TGCGCAGCCC CGCTGGGGAA CTGCGTACCG TAGAGATGCG CGTACGCGAG ATCCGCTGGC ACGAACAACC GGCGCATCTG CTCAACCTGC GGGACGTCAC CGAGCGTAAG CACATCGAGA CCGAACTGCG CCGAGCCGCC ATCGTCTTCG AAGAGGCCCA TGAAGCGATC CTGGTCACCG ATGCGGAGCA GCGCGTCATT ACGGCCAACC CCGCCTTCAC CGAGATGACC GGTTACACCG AGCAGGAGGT CCTTGGCAAG GACCTGGCAC TGCTCCGGTC GGGGTTCCAC GACGAGTCGT TCTATACGGC CATTGACGAC GCCCTGGCCA AGCAGGGCTA CTGGACCGGC GAGATGTGGA ACCGCTGCCG GGACGGCACC ACCTTCGCCA CCCTGGTCAC GGTGCGCGCG ATCTACGACG ACGCCGGGCA CCTCACGCAC TACCTGGCGG TTCTGGCCGA CATCTCCCGC CTGAAGGAGT ACCAGAGCCA GCTTGAGCGG ATCATGCACT CCGATCCGCT CACCGGCCTG CCCAACCGGC TGGTCTTCCA GGACCGTCTC CATCAGGCGC TGGTAGCCAA CCAGAAACAG ACCGGATTCT TCGCGGTCCT CTCCCTCGAC CTGAACGATC TCAAGGCGAT CAATTACAGC CTCGGACATG CGGTGGGCGA TGCCATCCTG CAGCAGCTGG CCGAGCGGCT GCGCAACGCG CTCTGTGAGG AGCACACCGT GGCGCGCCTG GGCGGGGATG AATTCGGTGT TCTACTCCTC GGCGTCCGCG ACGCCAGCGA GGTCGCAGCG ATTACCGAGG ACCTGAGCAA GGGGCTCGAT GAACCCTTTC AGATCGCCGA TCGAGCGATC CCCATCGCAG CGAGCATCGG CATTGCCGTC TACCCCGAAC AAGATGCCGG CGCGGCGGAT CTCTTCCAGC AGGCCAACGC CGCCATGCAC CAGGCCAAGC GCGAGGGTGT GAGTTACCGC TTCTTCAGTG AGGACCTCAC CGAACAGGCC CGGGAACGGG TTCAGCTCGG CAGCGAACTC CGCGAGGCGC TCAACCAGGG TGCTCTGGAA CTGCACTACC AGCCCCAGAT CGACCTGAGC AGCGGCGCCT GGGTCGGTTT GGAGGCCCTG ATCCGCTGGC ACCATCCGGT TCAGGGGTGG ATCAGCCCGG AGCGGTTCAT CCCGGTGGCC GAACGCATCG GCCTGGTGAC CACACTGGGC GCCTGGGTCC TAGAGCAGGC CTGCCGACAG GGGCGCATCT GGCTGGATGC CGGCTTCGAA TTCGGCCGTC TGGGGGTCAA CTTTGCCGCC CCCGAACTGA GTGCCCCCGA CCTGGCCGAG CGCGTGCTGG CGGCATTGGA TCGGGCCCGG CTGCCCGCAC GATATCTGGA GATCGAGGTG ACGGAGCGCC TTCTGGTGGA TCCGGATCCG GAGGTGATTC AGCAGTTGCA GCTACTCCGC AATCACGGGG TCACCGTGGC CCTGGATGAC TTCGGAACCG GGTACTCGGC TCTGAGCTAT CTCCGCGACC TGCCGGTGGA TCGACTGAAG ATCGACCGGA GCTTCGTCGA CGGCCTGCCC GACGACGAAC GCACCCTGGC CATCGCTCAG GCCATCGCCG GTCTCGGTCG GAACCTCGGC TTCACCATCA TCGCCGAGGG CGTCGAGACG CCCGCCCAGC GCGAGGCACT AATCGGGATC GGCTGCCCCT GGGCCCAGGG TTTCCTGTTC GGCCGTCCCG CCCCCGTCGC CGGCATCGAG GCGCTCGCCC CGCACTTCCC CCGTACCGAC ACCGAGGGCG GTCACAGTCG AGGGGGTGGT GACGCCGGTC GCGCGAAGTA G
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Protein sequence | MRRGGDYGRP SVIPGSIAGR YPVGGQTWLA ALDAIEVPIF IHDAEHRVIE ANRAYYQQAG LAPEEILGRP YYEIFPLCDG PLPGCRHGLQ AAHPEGDEAS PTSSEAVEEY FTTDAGHTFL SRSFTVHDED GAYRHSVHIL ENITRRRRAE QDQKRIHQAL LEREEQLHRL FENMTEGVLV VTPDGTVRYA NPSAANLFAR DSTALIGAVI GLPIGGPDAQ EIGLRSPAGE LRTVEMRVRE IRWHEQPAHL LNLRDVTERK HIETELRRAA IVFEEAHEAI LVTDAEQRVI TANPAFTEMT GYTEQEVLGK DLALLRSGFH DESFYTAIDD ALAKQGYWTG EMWNRCRDGT TFATLVTVRA IYDDAGHLTH YLAVLADISR LKEYQSQLER IMHSDPLTGL PNRLVFQDRL HQALVANQKQ TGFFAVLSLD LNDLKAINYS LGHAVGDAIL QQLAERLRNA LCEEHTVARL GGDEFGVLLL GVRDASEVAA ITEDLSKGLD EPFQIADRAI PIAASIGIAV YPEQDAGAAD LFQQANAAMH QAKREGVSYR FFSEDLTEQA RERVQLGSEL REALNQGALE LHYQPQIDLS SGAWVGLEAL IRWHHPVQGW ISPERFIPVA ERIGLVTTLG AWVLEQACRQ GRIWLDAGFE FGRLGVNFAA PELSAPDLAE RVLAALDRAR LPARYLEIEV TERLLVDPDP EVIQQLQLLR NHGVTVALDD FGTGYSALSY LRDLPVDRLK IDRSFVDGLP DDERTLAIAQ AIAGLGRNLG FTIIAEGVET PAQREALIGI GCPWAQGFLF GRPAPVAGIE ALAPHFPRTD TEGGHSRGGG DAGRAK
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