| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_5261 |
|---|
| Symbol | |
|---|
| ID | 5737219 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009974 |
|---|
| Strand | + |
|---|
| Start bp | 34321 |
|---|
| End bp | 35997 |
|---|
| Gene Length | 1677 bp |
|---|
| Protein Length | 558 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641282425 |
|---|
| Product | leucine-rich repeat-containing protein |
|---|
| Protein accession | YP_001548016 |
|---|
| Protein GI | 159901771 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATCAGA TTCATGCTGG GTATATTATG CCCGAGGATG CGACGCAGAC CACCCTTGAT
TTTAGCCGCT TAAGCCTCAC AATCCTTCCG ACGATGCAGG ATGTTTCTTG GAATATTACG
GCAATCGATT TATCCTATAA TAGCTTAACG ATGCTCCCTT ATGCGCTTCC GCGTGCGGCA
TCGCTGAAAC GCCTTCTGTT ACGTGTTAAT CCGCTCACTG CGCTTCCTGA ATGCATCCGC
GAATGCCACA ACCTTGAAGA ACTCTATGTC TCAGGCTGTC CCTTGACCAT GTTGCCAGAT
TGGTTGGATG AACTAACGGC CTTGCGAATA CTGGAGATCA GTGACACCGC CATTCCTGAT
TGTCCCTCGG TATTGCGTCG ATTGCCGAAT CTTCGGATGC TTGGCATCGC AAATCTCCCA
TGGACAACCC TACCGCCATG GTTTTGTGAC TTACCGCTGA CAACCCTCAC TATCGATGGC
ATGCCTAGAT GTGATTGTTC TCCCCTCGTA GGATTAAAAC AGCTTCAGCA TCTTGGCCTC
AGTGCCATGG ACTATACCAT TGTGCCTGAA TGGATTCGAC AATTGCCTTT GTTACACCTG
CTTGATCTCA GTCATAATCC CCTTGAAATA CTCCCATCTT GGCTAGAAAC CATCCCTATA
ACAACCCTCA TGCTTGCCCA TGTTCCATTA GCGGCGCTTC CCGATTGGCA TACGTGGGAT
CGGTTAACCA CACTCGATTT AACGGCATGT CATTTGGCTG ATGCTGCCTT TCGAATGCCC
TTGCCGCGCA ATTTAACCCA CCTGAATCTT GATCAAAATC CCATTACTCA GCTTCCATCA
GAGCTTTACC AGTGTCATTC ACTCTACGCT TGTAGTCTTG CGAATACCGC TCTAACCACC
CTTCCAGCAT GGTTTTTTGA AGATCTTCCA CTTGTATCAC TCGATATTTC AGGCACCAGC
CTCACGTTTC CGGCGCTCTC CCAGCGATCG ATGCTGGAAT CATTCATCTT TGGCATGGGG
AAAACGTCCG CTTGGCCATA CCTTCTCACA CACATGCCGA CATTACGCGT GCTTGATCTT
TCTGATACGT GGTTGCAGTC TCAAAGTCCA TCTATGGGTC ACGCGCTCTT TCCGCAGCTT
GAGACATTTC GTGGACCACG CGATCAAGAC CGTGTTCCTT TAATAGGAGC TATGCCAAAT
CTGCGTGTGG CAGTGTTAAG TGGTGGATTA TCACGAGGTT CGCGTGAGTA TCTTTCTGCA
CTCTTAGGAA AGAGTCCTCA GATCCAAGCA CTTGACCTTT CGCGTTGGCA TTGCAATCCG
ATCCCTTCTA CCCTTGTCGA TCTTGCCGAG TTGCAGACCT TGAATATTGC GCATAAGCAC
CTCGATCAGG TTCCTGGATG GGTGAACGAT ATGCCATACC TTAAATCACT GGATCTTTCT
GATAACCGAT GTACTGACAT ACCACGATGG ATGAGGAACA TGACACACCT TGAATCGCTT
GATCTTTCCG GGAATCCTTT ACAGACCTTT CCCTCATGGT TAAAGGATAT CCCAACGCTC
AGAGATGTCG CATTCATGTT TCCATCAGTC AACCTTCAGT GTGATCACGT CCTCCCAGAA
TTTCTGGCGG CAGGGATTCG CCTGGATGTC CAATATCCCC GTGATGACGC TGAATGA
|
|---|
| Protein sequence | MYQIHAGYIM PEDATQTTLD FSRLSLTILP TMQDVSWNIT AIDLSYNSLT MLPYALPRAA
SLKRLLLRVN PLTALPECIR ECHNLEELYV SGCPLTMLPD WLDELTALRI LEISDTAIPD
CPSVLRRLPN LRMLGIANLP WTTLPPWFCD LPLTTLTIDG MPRCDCSPLV GLKQLQHLGL
SAMDYTIVPE WIRQLPLLHL LDLSHNPLEI LPSWLETIPI TTLMLAHVPL AALPDWHTWD
RLTTLDLTAC HLADAAFRMP LPRNLTHLNL DQNPITQLPS ELYQCHSLYA CSLANTALTT
LPAWFFEDLP LVSLDISGTS LTFPALSQRS MLESFIFGMG KTSAWPYLLT HMPTLRVLDL
SDTWLQSQSP SMGHALFPQL ETFRGPRDQD RVPLIGAMPN LRVAVLSGGL SRGSREYLSA
LLGKSPQIQA LDLSRWHCNP IPSTLVDLAE LQTLNIAHKH LDQVPGWVND MPYLKSLDLS
DNRCTDIPRW MRNMTHLESL DLSGNPLQTF PSWLKDIPTL RDVAFMFPSV NLQCDHVLPE
FLAAGIRLDV QYPRDDAE
|
|---|
| |