Gene Haur_5198 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHaur_5198 
Symbol 
ID5737156 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHerpetosiphon aurantiacus ATCC 23779 
KingdomBacteria 
Replicon accessionNC_009973 
Strand
Start bp284448 
End bp286532 
Gene Length2085 bp 
Protein Length694 aa 
Translation table11 
GC content54% 
IMG OID641282362 
Productputative PAS/PAC sensor protein 
Protein accessionYP_001547953 
Protein GI159901707 
COG category[T] Signal transduction mechanisms 
COG ID[COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)
[COG2203] FOG: GAF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAGTAG CCCCCATTCC TAGTGATGAG TCAGCTCGTA TTCAGGCGCT CCATGGGCTT 
GGCATCTTAG ATACTCCGCC TGATCCACGG TTCGATCGCC TGACGCGGTT GGCGCAACGG
CTGTTCCACG TCCCGATCGT CCTTATTTCG TTGGTTGATA CCAATCGTCA GTGGTTTAAG
TCCTGTATTG GCCTCGATGT CCAGCAATCT AGTCGCGAGA TCTCGTTCTG TGCCCATGCG
ATTCTGCAGC CCGATCGTCC CCTGATTATC CTTGATACGT GGTGCGATAC ACGTTTCGCT
GACAACCCCG TTGTCAGCGG AACACCCCAT ATCCGCTTTT ATGCGGGCCA TGTGCTCCAT
GCTCCCAGCG GCGCGGCGGT TGGGACGCTC TGCCTCCTCG ATACGGTTGT GCATAGCGTG
TTTTCGGATG ATGATCAGGA GATTCTCGCT GACCTTGCGA TGCTTGTTGA GCGTGAGCTG
GCGGCAAATA CCATGCATGA ACTGCTGCAA ACCCAGCATC GGCTGATGAC GGACTTTCAA
GAAAGTGAAC TGCGCTTTCG GCAGATGGCA GAAACGATCG ATGCGGTATT CTGGATGTCG
GATTCCACGC GACAGCAGTT GTTGTATATT AGTCCGGCGT ACGAACGAAT TTGGGGCTAT
TCCTGCGCGA GCTTGTATGC GGATCTCCAA TCGTGGGTTA CGACCATTCA CCCTGATGAT
CGTGCAAGCG TCACTGCGTC CATGTCCAAG CAGGCCCATA CCCTTCGTGC CCTTGAATAC
CGGATTATCC GCTCGGATGG TGCGGAGCGT TGGATCTATG ACCAATCCTA TCCAATCTAT
AATGATAGCG ATCAGGTCAT TCGCCTCGTT GGCCTTGCGC GTGATATTAC CCAACGGAAA
CAGCAAGACC TCCGTGTCGT CCAGCTTACA GAGCAACTGA CCTCACTCAT GCAGAGTCTC
CCTGGAGTCG TGTATCGGTG TAGTCCCGAT ATCAATTGGG GTGTCACGAT CCTCAGCGAT
GGCATTGAAA CACTCACTGG CTATCCCGCA AGCGATTTCT TGCATAATAC CATCCGACCA
TTTGTCAGTT GCATCGATCC CCTCGATAGG GTTCGGGTCG AGGAAACGAT GACTGCGGCG
ATCATCGCCC AGCAACCCTA TAGCGTTGAT TACCGAATCA TACACCGCGA TGGCGAGGTC
TGCTGGGTAA CGAACCGTGG GCGGGCTGTC TACGATGACG CTGGTCGTGT CCGCTGGTGT
GATGGCGTAA TCATTGATGT GAACGCACGC GCTGCGATCG AAGCTGACCA TCGGCGGTTT
GTGCAACTAG CTGATATGCT TCCAGAGTTT GTCGGTATGG CAACCCTCGA TGGTCAGCCG
ATCTATATTA ATCCTGCTGG TCGTGCCTTG ATTGGGATGC GCCCCGAAGA ACCCTTAGCA
CGTCAACCAT TAACGGCATT GCATCCCAGC TGGGTGCAGG AGTTGCTCCA GACAACGGCC
CTGCCAACGG CGCTTGCAGA AGGGTACTGG AGCGGAGAGA CAGCCTTAGT AACGGCTGAT
GGGAACGAGA TTCCTATTGA CCAGATGATC CTGTGCCATC GCGATGCTGC CGACCAACCG
ACTCACTTCT CTACCATCGC CCGTGATCTG ACCCATGAGC GACAGGCGGC TGCTACTCGT
CAAGCCCTCC AAGCAGAAAT ACTTCAAATT CATACGCGCA CGATTATGGA ACTGTCCACA
CCCCTAATTC ATATTACCGA TACGACCATT CTGATGCCGC TGATCGGTGC AATTGATACG
ATACGGGCAC AACGTATCCT TGAATCACTG CTCCAAGGGG TGAGTCAACA GCGGGCAAGT
CGTGCGATTG TGGATCTCAC GGGTGTTCCA GCACTTGACC CCCACGTGGC TGCCATCTTT
ATCCAAGCAG CTGATGCCGT GCGATTACTG GGAGCTGAGG TCATCGTGAC GGGCATCCGA
CCTGAAATTG CCCAGACGAT CGTCACCATG GGGGTCGATC TCCGCAGGAT ACGGACTTAC
AGTGATCTCC ACCAAGGAAT TAGCTATGCT ATGCAAGGGC TTTAA
 
Protein sequence
MEVAPIPSDE SARIQALHGL GILDTPPDPR FDRLTRLAQR LFHVPIVLIS LVDTNRQWFK 
SCIGLDVQQS SREISFCAHA ILQPDRPLII LDTWCDTRFA DNPVVSGTPH IRFYAGHVLH
APSGAAVGTL CLLDTVVHSV FSDDDQEILA DLAMLVEREL AANTMHELLQ TQHRLMTDFQ
ESELRFRQMA ETIDAVFWMS DSTRQQLLYI SPAYERIWGY SCASLYADLQ SWVTTIHPDD
RASVTASMSK QAHTLRALEY RIIRSDGAER WIYDQSYPIY NDSDQVIRLV GLARDITQRK
QQDLRVVQLT EQLTSLMQSL PGVVYRCSPD INWGVTILSD GIETLTGYPA SDFLHNTIRP
FVSCIDPLDR VRVEETMTAA IIAQQPYSVD YRIIHRDGEV CWVTNRGRAV YDDAGRVRWC
DGVIIDVNAR AAIEADHRRF VQLADMLPEF VGMATLDGQP IYINPAGRAL IGMRPEEPLA
RQPLTALHPS WVQELLQTTA LPTALAEGYW SGETALVTAD GNEIPIDQMI LCHRDAADQP
THFSTIARDL THERQAAATR QALQAEILQI HTRTIMELST PLIHITDTTI LMPLIGAIDT
IRAQRILESL LQGVSQQRAS RAIVDLTGVP ALDPHVAAIF IQAADAVRLL GAEVIVTGIR
PEIAQTIVTM GVDLRRIRTY SDLHQGISYA MQGL