| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_4421 |
|---|
| Symbol | |
|---|
| ID | 5736272 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | + |
|---|
| Start bp | 5657546 |
|---|
| End bp | 5658361 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641281584 |
|---|
| Product | anti-sigma-factor antagonist |
|---|
| Protein accession | YP_001547181 |
|---|
| Protein GI | 159900934 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) |
|---|
| TIGRFAM ID | [TIGR00377] anti-anti-sigma factor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGATT TAGCAGCTTT TTACACCAAA CACTTTGATG AAATTATCGA CACTACGATC
GAATTAATTC AAGCCAATGT GGTTGAATAT AGCAAAATGG CGCGTGATGA GCTTAAAAAG
CGAGCTGTTG CCGCCATCGA TGCATTAATT CGCGATTTAC GTGAGCCAGA TATCCATGCC
TACCAACAAC ATATGCGAGC GATAAGCTAT GAGCGCTTCC GCCAAAATAT TCCATTAAAT
AGCGTTCAAC AAGTCTTGCG CAGCATTAAT CAAGCGACCT CCAATACATT TCGCAAATAC
TATGCTGAAG ATCCCATCCT TTTGCTCGAA ATGGTCGAAC GCCTGCATGA GCTAACCGAA
GAAGGTATGA TGGGCATGTT CAATGGCTAT GAAGATGCCC AAATCGAAAT TATCTCCAAC
CAAGAATCTG CCTTAGCCGA AGTTTCATCA CCAATCGTGC CAGTTTATGG TGGAATTCTG
GTGTTGCCAC TGATTGGCTC AGTTGATTCG CGGCGAGCTG GCCAAATTAT GGAAGCCCTG
CTCGAAGCAA TCAACACCTA TAGCGCCGAT GTCGTGATTT TGGATATTAC GGGTGTTCCG
GTGATCGATA CTGGCGTTGC CAATTATCTC CTCCAAGCTG CTCGTGCTGC ACGTTTGCTC
GGCTCGACCG TGGTGCTGGT GGGGATTGGC GCTGAAATTG CCCAAACGAT TGTTCAATTG
GGCATCGATT TGACTGGGAT TGTTACCCGC GCCAACCTGC AAGCCGGAGT TGAATATGCG
CTCGAATTGC AAGGCCTAGC GATTCGCCCG CGCTAA
|
|---|
| Protein sequence | MSDLAAFYTK HFDEIIDTTI ELIQANVVEY SKMARDELKK RAVAAIDALI RDLREPDIHA
YQQHMRAISY ERFRQNIPLN SVQQVLRSIN QATSNTFRKY YAEDPILLLE MVERLHELTE
EGMMGMFNGY EDAQIEIISN QESALAEVSS PIVPVYGGIL VLPLIGSVDS RRAGQIMEAL
LEAINTYSAD VVILDITGVP VIDTGVANYL LQAARAARLL GSTVVLVGIG AEIAQTIVQL
GIDLTGIVTR ANLQAGVEYA LELQGLAIRP R
|
|---|
| |