| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_4022 |
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| Symbol | |
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| ID | 5735883 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009972 |
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| Strand | + |
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| Start bp | 5133032 |
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| End bp | 5134918 |
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| Gene Length | 1887 bp |
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| Protein Length | 628 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641281172 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001546782 |
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| Protein GI | 159900535 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACATCTA ATACCAAGCA ATTAATCATT TGGGTTGGCA ATGCTGGCGA GCAACGAACT
CAGGCTGCTC AAGCATGGTT AGCTGACCAA ACTGCGGCAC GAACTTGGTT GCTCAGCATG
AATCGAGCCA ATTTGGGCCA TTGGGCCGGC TTGAATAGCT TTGTTAGCTC GCTATTACCA
GCGATTAAGG CCCAAGCCCC CGAATTATTA GTCAAATATG ATTATGAGTT GGCCTTGGTT
TTGCCGCAAT TGCAACGTGA ATTGGCTGTG CGCAACCCAA GCCTCACCGA TATTAGCAAT
CCCCAAGAGC GCACCCGCAA TTATGCTGCT GATCGCGCCT TTCGGATTGT CCAAGGGCTG
ATTGATTTGG TCCATGAATT CCGCCAAACT GCGCCAGATC AGCCATGGGT CATTGTTTGT
GATCAGTTTG ATCAGGCTGG CTCGTTGGTA ACCATGTTTT TCAAAGAACT CTTGCGGCGT
GCCGACCCAC GCATGAGCTT AACCATTGGC TTTTTAGTTG AACCCAACCA GCCAGAATTG
CTGAACGAGT ATCACAGCTG GCATGCGCAT GTTGAGGTCG TGCAAGGCGC TTGGCAAGCT
GATCCGCCGA TTGTTATCGA TCCGGCTGAG GCCAAACGCC AGCTCGAAGT GCTGGAACGT
GAGCATACGT TTGATCCAAT TGAGATTGAA TTGCATCTGC CTCAATTGAT TCAGCTGGCA
ACTGCCGCCA ACGAGCCACG CAAACGCTTG GGTTTTATGC ACGAAGGCTT GTCGATCTGT
TCAACTCGTG GTTTATACGC CGATGCCTTG TATTATGGCG AGCCACTGCG AGTCGCCATG
GAACACGAGT TTCCCAAGAG CGTCGATTTT CGCTTGAGTG CCTACTTAAA GCTCTACAAT
TGTTATATTG GGCTAAAACA AGCTGAACCA GCCTTGGATA TTGCCGAAAC TGCGGTGAGC
ATTACTGATA ATCCTGCCCG TTTATATAGC TGGTATTATC TGATTGCAAT GATTCATGCA
CGATTTGCCG AGCCACGCGA TTTTGATAAA GCCGAGTATT ACCTCGATTT AGGCATTGAA
GCGATAAATA AAGCCGATAT TCCAGCGCAT GAAAAACTAT TTCAATCGTC ATTCAATCGC
AATGGTTTAG CATTAATTCG TCACTTCCAA AAACGCCCCT TGGAAGCGAT TGAAATTTGC
CAAGAATGTT ACAAAAATCT TGAAACTGGC TTAGATACCG AAGATCATAA GCTGCATCGC
TCGGTATTGC TCTACAATAT TGCTCAGGTT TACGATTCGC TCAAAGATTA TCCAAAAGCA
ATCGAATATT ATAGCTTGAC GATTGAAATG GACCCCAACT ACGCTGAATA TTATAATGAG
CGAGCCAATA TTTATCTGCA TATCGGCGAT TATGCTGCTG CCGAACGCGA TTACCAACGC
TCAATCGAGC TTAGCCCACC CTACACCGAA GTTTGGACAA ACCTTGGCCA GTGCTACCAA
GTTCAAGAAC ATTTTGAAAA AGCCATTGGC GCATTCAGCC GAGCGCTCGA TATTGACCCC
AAAAATGTGG TTGCGCTCAA TCATCGAGCT GAATGCTACG AGGGTTTGGG CCAAACTCAG
GCGGCAATTG CCGACTACAG TGCCAGCCTA AAGCTGAAAA CCAGCGAAGC CTCAACCTTT
GCCAACCGCG CGATTCTCTA CTACGAGTTG GGCGAAATTG AAGCTTCATT GGCCGATTTG
AATACCGCCA TCAGCCTCCA ACCCGATCTC GCTGAGCTGT ATGAAAATCG TGCGGTCGCT
TTGGAAGCGC TCGAACGCCA TGCTGAAGCT GAACACGATC GTCAACAAGC GATTTTGTTG
GCCAAAGCCC ACGAGGTTAA TGGCTAA
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| Protein sequence | MTSNTKQLII WVGNAGEQRT QAAQAWLADQ TAARTWLLSM NRANLGHWAG LNSFVSSLLP
AIKAQAPELL VKYDYELALV LPQLQRELAV RNPSLTDISN PQERTRNYAA DRAFRIVQGL
IDLVHEFRQT APDQPWVIVC DQFDQAGSLV TMFFKELLRR ADPRMSLTIG FLVEPNQPEL
LNEYHSWHAH VEVVQGAWQA DPPIVIDPAE AKRQLEVLER EHTFDPIEIE LHLPQLIQLA
TAANEPRKRL GFMHEGLSIC STRGLYADAL YYGEPLRVAM EHEFPKSVDF RLSAYLKLYN
CYIGLKQAEP ALDIAETAVS ITDNPARLYS WYYLIAMIHA RFAEPRDFDK AEYYLDLGIE
AINKADIPAH EKLFQSSFNR NGLALIRHFQ KRPLEAIEIC QECYKNLETG LDTEDHKLHR
SVLLYNIAQV YDSLKDYPKA IEYYSLTIEM DPNYAEYYNE RANIYLHIGD YAAAERDYQR
SIELSPPYTE VWTNLGQCYQ VQEHFEKAIG AFSRALDIDP KNVVALNHRA ECYEGLGQTQ
AAIADYSASL KLKTSEASTF ANRAILYYEL GEIEASLADL NTAISLQPDL AELYENRAVA
LEALERHAEA EHDRQQAILL AKAHEVNG
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