Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Haur_3613 |
Symbol | |
ID | 5735474 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Herpetosiphon aurantiacus ATCC 23779 |
Kingdom | Bacteria |
Replicon accession | NC_009972 |
Strand | + |
Start bp | 4541841 |
End bp | 4544000 |
Gene Length | 2160 bp |
Protein Length | 719 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641280762 |
Product | RecD/TraA family helicase |
Protein accession | YP_001546377 |
Protein GI | 159900130 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
TIGRFAM ID | [TIGR01448] helicase, putative, RecD/TraA family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATCAAC TAACAGGCAA CCTAGAACGC ATCACCTATC GCTCGGATGA AACGGGCTAT ACCGTGGCGC GTTTGAAAGC CCAAGGCCAG CGCAGCGTGA TCACAATTGT TGGGCGTTTG CCCGATGTGC AAGTTGGCGA ACAGTTGCAA CTTGAAGGCC AATGGATCGA GCATCGAACC CATGGCCGCC AATTTGAAGT TGCTAGCTAT CAAACTGCCC GGCCAACTGG CAACGAAAGT ATTGTGCGCT ACTTGGCATC GGGCTTATTG CCAGGCATTG GTCCAGTCAA TGCCCAACGC ATCGCTGATA CCTTTGGTGA AGCCACGCTC GATGTACTTG ATACTATGCC CGAACGCTTA CGCGAAGTAA AAGGCTTAGG CACGAAGAAA ATTGCCGCAA TTATCGTAGC CTGGCAAGAA CAACGTGCAA TCAAAGCCTT GCTCGAATTG GGCCAAGCCG TTGGGTTAAC GACAGGTTTA GCCTTACGCA TTTTTCGGCA CTATGGCGAG CAGGCTAGCC AGATTGTGCA ACACGACCCT TATCGTCTAG CCTTAGAAAT TGAAGGCATT GGCTTTCCGA CTGCCGACCA CATTGCCCAA GCTTTGGGCG TAGCGCGAGA TGCTCCCAGT CGGGTGATTG CTGGATTGCG CTATACCCTC AGCATGGTTG CCAACACCGA AGGCCATTGC GCTCTGCCCC AAATCGAGTT AATCGCGCAA ACTCAAACCA TCCTAGAATT ACCCCATGAG CTGATTGCCG AACAATTGGC GGTGGCAACC GAATCAGTGT TATTGGTGCT TGATGGCGAT CTAGTCTATT TACCAGCCTA TTATCATGCT GAAACCGAGT TAGCACATAA CTTGCAGCGC TTGCAACAGC TCCCCAGTGC AATCCAATTG CGCTTCAAGC AGCAAAGCGA TGCGATTATT ATGCGCCAAT TGCATAATGC GAGCTTCGAT TTGAGCCAAC GCCAAGCCGA AGCCGTGCTG GCCGTGCTCC GCTCCAAAGT GGTGTTGCTA ACTGGCGGGC CTGGCACAGG CAAAACCACC ACAGTCCGCG CAATTTTGGC CTTGCTCCAA CAAGTTGGGT TACGCACAAT TTTGGCGGCT CCAACCGGAC GCGCCGCCCG TCGTCTCGCC GAAACCACCA ATCATCCAGC TGCCACAATT CATCGCACCC TCGAATATAG CGGCGGCGCT GGCAATGACC GCTGGGGCCG CAACGAACAT GCCCAACTAG TTGCCGATTT AGTGGTCATC GACGAAACCT CAATGCTCGA CATTGTGCTG GCCCATCATA TGGTCAAGGC CTTGGCTCCA ACCACCCATT TGCTCTTGGT TGGCGATCCT GATCAGTTGC CAGCAGTTGG GCCAGGCGCT GTATTGCGCG ATTTGTTGGC TAGCAACCGC ATCACAACCG TCCATTTGGA TACGATTTTT CGCCAAGCCG CTGATAGCCA AATTATCACC AATGCCCATG CAATCAATCA AGGCCAGTTA CCCAGCGTCA ATCAAGGTGA TTTCTATTGG TTTCCGCGCA GTAACCCAGC CGAATGCGGT GCGATGATTG TGGATTTGTT GACTACCCGT ATTCCACGCC AATTCCCGCA ATTTGATCCT CTGCGCGATA TTCAGGTGTT GGCAGCAACC CATCGGGGCG CGGCAGGCGT GCTCGAATTA AACAGCCAAC TGCAAGCAGC ACTCAACCCG CCAAACACCA CTCGCCAAGA AGCCACGATT GCTGGCACGC TCTTTCGCGA AGGTGATCGG GTTATTCAAA CCCGTAACAA TTATGATCTC GATGTCAGCA ATGGCGATTT AGGCCTGATT CAAACGATTG ATCTCGAAGA ACGCACGGTT AGCGTTTATT TTGACGATAC TCGCAACGTC GTCTATCAGT GGAATGAGTT TGATGAAGTG GCCTTGGCGT ATGCAATTAG CGTACATAAA GCCCAAGGCT CAGAATATCC GGTGGTGATT GTGCCAATGT TGCGTTATTA CAATGTGCTG CTCAACCGAC CGTTGCTGTA TACCGCCATC ACTCGCGCTC GTCAATTGGT GATTCTGACT GGCGATTGGC AGGCCGTCGA ATTTGCGATT GCCCAACGCC GCAGTGGGCA GCGCATCACG GGGTTAAGCC AACGCTTTGG GATGCATTGA
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Protein sequence | MDQLTGNLER ITYRSDETGY TVARLKAQGQ RSVITIVGRL PDVQVGEQLQ LEGQWIEHRT HGRQFEVASY QTARPTGNES IVRYLASGLL PGIGPVNAQR IADTFGEATL DVLDTMPERL REVKGLGTKK IAAIIVAWQE QRAIKALLEL GQAVGLTTGL ALRIFRHYGE QASQIVQHDP YRLALEIEGI GFPTADHIAQ ALGVARDAPS RVIAGLRYTL SMVANTEGHC ALPQIELIAQ TQTILELPHE LIAEQLAVAT ESVLLVLDGD LVYLPAYYHA ETELAHNLQR LQQLPSAIQL RFKQQSDAII MRQLHNASFD LSQRQAEAVL AVLRSKVVLL TGGPGTGKTT TVRAILALLQ QVGLRTILAA PTGRAARRLA ETTNHPAATI HRTLEYSGGA GNDRWGRNEH AQLVADLVVI DETSMLDIVL AHHMVKALAP TTHLLLVGDP DQLPAVGPGA VLRDLLASNR ITTVHLDTIF RQAADSQIIT NAHAINQGQL PSVNQGDFYW FPRSNPAECG AMIVDLLTTR IPRQFPQFDP LRDIQVLAAT HRGAAGVLEL NSQLQAALNP PNTTRQEATI AGTLFREGDR VIQTRNNYDL DVSNGDLGLI QTIDLEERTV SVYFDDTRNV VYQWNEFDEV ALAYAISVHK AQGSEYPVVI VPMLRYYNVL LNRPLLYTAI TRARQLVILT GDWQAVEFAI AQRRSGQRIT GLSQRFGMH
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