Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Haur_3513 |
Symbol | |
ID | 5735374 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Herpetosiphon aurantiacus ATCC 23779 |
Kingdom | Bacteria |
Replicon accession | NC_009972 |
Strand | - |
Start bp | 4423509 |
End bp | 4424369 |
Gene Length | 861 bp |
Protein Length | 286 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 641280660 |
Product | rhomboid family protein |
Protein accession | YP_001546277 |
Protein GI | 159900030 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAGATC CCTATTCAGG CTATCAACCT GAGCGTGTTG AATATTCGCC CAGCCAACCT GTGATGGTGC AACTGCCCAA TGCACCAGTA CGGGCTACTT GGGTGTTTAT GGCGATCAAC GTCGTTATGT TTGTGATCTG TATTCTTCAG GGCATGAGTG TGATGGGCAA TACCGAAGGC GATGCCTTTG TCTTGATCGA ACTTGGAGCC AAGTGGTCGC CTTTGATGGA TATCGGCGGC GAATGGTGGC GCTTATTCAC GGCGACCGTG CTGCACGGCG GGATTGTGCA TATTGGCTTT AATATGTATG CCCTGTATGC GCTTGGCCCA ACCGTTGAGC GCTTCTATGG TAGCCTGCGG TTTAGCGTGA TCTACCTGAT TGCGGGGATT GGCGGGGCTT GGGCTTCGTA TAGTTTTGGC AGTTTGACTG GCCCTTCAAT TGGCGCATCG GGGGCAATCT TCGGCCTGAT TGGCTGCTTG ATTGGCTTTT TCCTTTCGGC TCGCAGTGTC TTGGGTGATT TTGCTCGCCA AAACTTGCGC CAAATGGTCG GTACAGCCGC GATTAACTTG ATCATTGGCT TATCGTTTTC GTCGGTGATC GACAATTATG CTCACATTGG CGGGATGCTG ATGGGCTTGG CGGTGGGCTA TGGTTTGGCT CCACGCTTAG TCTATATTGC CGATTGGTTT AAGCCGCGGA TTGAGGCTAA AGCACCATCA GCATTGCTCT GGCTGAGCGT GGTTGGCGCG ATTGGCTTTA TTCTGGTTGC GACGTGGTTT GTGCATAACC AACGCATGAA CGATGCTACA AGCGTTGCGC TCTTAGAAGA ACTTTATCAA GCTTGGTTAA ATGCCCGTTA G
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Protein sequence | MQDPYSGYQP ERVEYSPSQP VMVQLPNAPV RATWVFMAIN VVMFVICILQ GMSVMGNTEG DAFVLIELGA KWSPLMDIGG EWWRLFTATV LHGGIVHIGF NMYALYALGP TVERFYGSLR FSVIYLIAGI GGAWASYSFG SLTGPSIGAS GAIFGLIGCL IGFFLSARSV LGDFARQNLR QMVGTAAINL IIGLSFSSVI DNYAHIGGML MGLAVGYGLA PRLVYIADWF KPRIEAKAPS ALLWLSVVGA IGFILVATWF VHNQRMNDAT SVALLEELYQ AWLNAR
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