Gene Haur_2479 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHaur_2479 
Symbol 
ID5734360 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHerpetosiphon aurantiacus ATCC 23779 
KingdomBacteria 
Replicon accessionNC_009972 
Strand+ 
Start bp3170109 
End bp3171197 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content51% 
IMG OID641279619 
ProductCRISPR-associated RAMP Csm5 family protein 
Protein accessionYP_001545245 
Protein GI159898998 
COG category[L] Replication, recombination and repair 
COG ID[COG1332] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) 
TIGRFAM ID[TIGR01899] CRISPR-associated RAMP protein, Csm5 family 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCAACT ATGGATTAAC GATTGAAACG CTCTCGCCAG TGCATATCGG CGCTGGCGGG 
CCAGATTTGC GCCGCAACAT TGATTTTGCG ATCTTCAACA ATGTTCTCTA TCTGCTCAAT 
GTCGATGCGG TGCTTGAACA GATTTTGCCC GAAAATCCCA ACGACCGTTT GTATCAACAA 
ATTTTGAATA CACCCGATTT GGGCAGTTTT TTAACGGCTG ACCTGCTGAG CAAGCATCCA 
GAGCTGTATT ACTACAAACT TGAAGGCGTT TCCAAGCTAG AAACTATGCG GCCTGTGATT 
AAACACTGGA CGCATGCGCC CTACATTCCA GGTAGCAGCC TCAAAGGTGC TTTGCGCAGC 
GCATGGGTTC GCCAACACTA TCAGCAGCGC AACCTAATCC TAGATTTGCA GCAATTAAGC 
GATCGGCGCG AATGGGCTTT TCAGGCTCAG GAAGCACGTT TGCTTAGTCC TAAAGCATCA 
CGCCCAAGCC AAAATCCCAA CTATGACCTG TTTCGGGCAA TTCAGGTCAG CGATAGCCAG 
CCCGCGCCTG CTGATGCGCT ACGGCTTTAC AACGCGGTGG TGTTTCCAGC TGCCAATCAA 
GGTATTCCGC TTGATTTGGA AGCGATTAAG CCGCGTGTAG CCCTGCAAGC CCGAATCAAA 
TTCGATGATT ACATCTTGGA TAAGCAGGCC AAACAATTTG GGGTGCGCGA GCAAGGATTT 
AGCGTCGAGG CCTTGAAACA GGCTTGGCGC GAACAAGGCT TAGCGCGAAT TCAGCAAGAA 
TTAACCTTTT GGACTGGCCG CCGCGAAGGC GAGCATCTCC AGCAATTCTT TAGCAACTTG 
GCCCAACAGG CCAATACTGC GCCCGACAAC TGCTTCTATA TCGACATTGG CTGGGGCACA 
GGCTGGAAGA GCAAAACCCT TGGCGATATT ATCAAAACGC CGCAACTTGC CCAGTTGATG 
CGCCGCTATC GGCTGAGTCG CAAGGAATAT CGTGAAGGCG ATCGCTTTCC AAAAACCCGC 
CGCGCCGCTC GTGATACCAA AGGTGCGTTA CGCGTCCCAT TTGGCTGGGT CAAAGTAACG 
CTTAATTAG
 
Protein sequence
MTNYGLTIET LSPVHIGAGG PDLRRNIDFA IFNNVLYLLN VDAVLEQILP ENPNDRLYQQ 
ILNTPDLGSF LTADLLSKHP ELYYYKLEGV SKLETMRPVI KHWTHAPYIP GSSLKGALRS 
AWVRQHYQQR NLILDLQQLS DRREWAFQAQ EARLLSPKAS RPSQNPNYDL FRAIQVSDSQ 
PAPADALRLY NAVVFPAANQ GIPLDLEAIK PRVALQARIK FDDYILDKQA KQFGVREQGF 
SVEALKQAWR EQGLARIQQE LTFWTGRREG EHLQQFFSNL AQQANTAPDN CFYIDIGWGT 
GWKSKTLGDI IKTPQLAQLM RRYRLSRKEY REGDRFPKTR RAARDTKGAL RVPFGWVKVT 
LN