| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_2475 |
|---|
| Symbol | |
|---|
| ID | 5734356 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | + |
|---|
| Start bp | 3165630 |
|---|
| End bp | 3167825 |
|---|
| Gene Length | 2196 bp |
|---|
| Protein Length | 731 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641279615 |
|---|
| Product | CRISPR-associated Csm1 family protein |
|---|
| Protein accession | YP_001545241 |
|---|
| Protein GI | 159898994 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1353] Predicted hydrolase of the HD superfamily (permuted catalytic motifs) |
|---|
| TIGRFAM ID | [TIGR02578] CRISPR-associated protein, Csm1 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGATC CCCCAGTCAT ACGGGCATTG AAGAGTATGA CAAACTCGGT CAAGGCTTGG
GATACTACGC CACTGCATTC GATCTTCAAC CAAATTGCTC CATCAGCCGA GCCAAACACC
CAAACTTCAA CGCCCTACTT TCTCCAAGCG CAACGTTTTA GCCTCACCGA ATCTGCGCTT
TTTCCAATCA CCGAACGTCC GCCAGTTTCA GCCGATTTAC AAACTCAATT CAATCAAGCG
ATTGAGCAAT GCCATGCCGA GCCAAGCATT CATGTGGTCC AGATGCTGAG CTTGTTTCAC
GATTATGCTT GGGCCGTCAG CTACCAGCCA ACTGCTGGCG AGACAGCCGA TCCGGTTGTA
TCGCTCTACG ATTATGCTCG CACCAAAGCC GCGTTGGCCG CCGCTGGTGA GCAAACCATG
TTAGTTGGTG GCGATCTTTC GGGCGTGCAG GATTTTATCT ACACCATCGC GGCCAATCGT
GCCGCCAAAA GCCTGCGCGG TCGCTCATTC TATTTGCAAA TGCTGACCGA TGCCTTGGCT
GGTTGGGTGT TGCAGCAAGC AGGCATGCCC AGCACTAATT TGCTCTATAG CGGCGGTGGG
CGATTTTATG TGATTGTGCC CGCCGCTTGT TACGAACAAT TGGCGCAGTG GCGACGGGCG
CTTGGCCAAT TTTTGCTGAA TGTCCACGAT GGCGAGTTGT ATATCGCCTT GGGTGGCGCG
ACCATCGCCG ATGCTGCGCA CAATTTTGAG GCCTTATTTC GCGCCGTCAA CGACCAAGTG
ACCGCTGATA AACGTCGCCG TTTTGCAACC CTCGATAATC AAGAGCTGCA AGCCAAATTG
TTCACGCCAC GCGGCCATCG CGGCAACGAG GATGACCGCT GCGCAACCTG TGGTTATATG
GGGCCGAGCA ATCAATTTGA AGCCGATGAA GATGATAGCA AGATCTGCCG GCTCTGCGAA
AGCACGATTA AGCTGGCATT CAGCTTGCAC GATGCCCAAT TTCTTTGCAT CAGCCAGCCA
CAGCCCAATC TCTCTGCGGT CAAAGGCCGC ACAAACGCAA AGGATATTTT GGCGGGCTTG
GGTTTGCAGG CAGAAATTTG TTTCGATCAG CAGGAATTGA TCGATCATCT CAATCGCAAT
TCAGCACAAT CAATCCATGT GCAGATTATT CGGCCCTTTG CGGGCGATTT AGCGATGCTG
AGCCAACTTC GTGCCAATTA TCGCCAGCAT GTCTTTAGCA TACGCCCAAT CGTCAATGTA
ACACCTAAAG CTCCTAACGG TGAGGTCAAA TCGTTTGATC AGTTGGCCAA AGCGAGTCGT
GGCATCAAGC GTTTTGGGGT GCTGCGCATG GATGTTGATG ATCTTGGCGA TATTTTTGGC
TATAGCCTTG CCAAAGCCTC GTTGGCCCGT ATTTCAAGCC TGAGTGCCGC CTTTTCGCGC
TTTTTCGAGG GCTGGGTTGG CGAAATTTGT CGTGACCAGA ATATTGCCGC CGCAATCTAC
CAGCCGGAGC AAGCGAGCAA TCAAGCAATC AGCCCTGAAC AAATTTACAG CGTCTATTCG
GGCGGCGACG ATTTGTTTCT GGTTGGCAGT TGGGATGTGC TGGCCCATGT CGCCAATCGA
ATTCAACACG ATCTTCAGCG CTACACGGGC TATAACCAAT TAATCCATGT TTCGGCGGGA
TTGACCCTGC ACACCGAAAA ATTCCCGTTA TATCAAGCGG CCAAACTAGC CCATCATGCG
CTTGATCAGG CCAAAGATGC TGCGCCACGC CAAGCAATTC GCAAAAACGC CCTAGATTTC
CTTGATCAAA CGATTGCCTG GGAAGCCTAC CCCGCCTTGA TCAACTGGCA TCAACGTTTG
TGGCGGCTCT ATCAAGGCGA GCATGGCATG GTGCGTTCGC TGCTGCAAGT GCTGATGGAG
CTGTATAGCC AATATAACGA GCATAGCCAG CAACGTCAAA AATCGGGCAA AAAACACACC
GCCTATGGCC CATGGATTTG GCGTGGCAAA TATCAACTGG CCCGCATTCG CCAACGCTAT
GAGAACCATC AAGAATTACA AAAACTCTTG CGAGATATCG ATGAAGATTT ATTTACGGGG
TTCGATGATC CGCATCGGAT CAGTTTGCGC ACAATCGAGC AGCTTGGCTT AGCCGCTCGT
TGGACACAAT TATTAATTCG TGAGCAAGGA GATTAA
|
|---|
| Protein sequence | MSDPPVIRAL KSMTNSVKAW DTTPLHSIFN QIAPSAEPNT QTSTPYFLQA QRFSLTESAL
FPITERPPVS ADLQTQFNQA IEQCHAEPSI HVVQMLSLFH DYAWAVSYQP TAGETADPVV
SLYDYARTKA ALAAAGEQTM LVGGDLSGVQ DFIYTIAANR AAKSLRGRSF YLQMLTDALA
GWVLQQAGMP STNLLYSGGG RFYVIVPAAC YEQLAQWRRA LGQFLLNVHD GELYIALGGA
TIADAAHNFE ALFRAVNDQV TADKRRRFAT LDNQELQAKL FTPRGHRGNE DDRCATCGYM
GPSNQFEADE DDSKICRLCE STIKLAFSLH DAQFLCISQP QPNLSAVKGR TNAKDILAGL
GLQAEICFDQ QELIDHLNRN SAQSIHVQII RPFAGDLAML SQLRANYRQH VFSIRPIVNV
TPKAPNGEVK SFDQLAKASR GIKRFGVLRM DVDDLGDIFG YSLAKASLAR ISSLSAAFSR
FFEGWVGEIC RDQNIAAAIY QPEQASNQAI SPEQIYSVYS GGDDLFLVGS WDVLAHVANR
IQHDLQRYTG YNQLIHVSAG LTLHTEKFPL YQAAKLAHHA LDQAKDAAPR QAIRKNALDF
LDQTIAWEAY PALINWHQRL WRLYQGEHGM VRSLLQVLME LYSQYNEHSQ QRQKSGKKHT
AYGPWIWRGK YQLARIRQRY ENHQELQKLL RDIDEDLFTG FDDPHRISLR TIEQLGLAAR
WTQLLIREQG D
|
|---|
| |