Gene Haur_2396 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHaur_2396 
Symbol 
ID5734277 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHerpetosiphon aurantiacus ATCC 23779 
KingdomBacteria 
Replicon accessionNC_009972 
Strand- 
Start bp3052607 
End bp3053584 
Gene Length978 bp 
Protein Length325 aa 
Translation table11 
GC content50% 
IMG OID641279537 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_001545164 
Protein GI159898917 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGTTTCT TGTTGCGACG GCTGGGCTTT TACGCGGTCG CGGCTTGGGT CTCGCTTACC 
GTCAATTTCT ACCTACCCCG GCTTATGCCT GGTGACCCAG CCTCGGCTAT CTTCGCCCGT 
TTTCAAGGCC GCCTACGCCC TGAAGAAATC GATTCGCTGC GCAAAGCTTA TGGCCTAAGC 
GATGCCCCTT TGCTTGAACA ATATTTCAAC TACTTGAGAA GTTTGAGTCG CGGAGAGTTT 
GGCATCTCGA TCAATTTCTT TCCGGCCCAA GTTACCGATG TGATTTCAAC TGGATTTATG 
TGGACTATCT TGTTGGCTGG TTTAGCCACC GTGATTAGCT TTTTCTTGGG CAATGTCTTG 
GGGATTATCG GCGCTTGGCG GCGCAATGGC ATCCTCGATT CGGTCGCTCC ACCTTTACTA 
ACCTTCATCG GCGCATTTCC CTACTTCTTC TTAGCCATGA TTGCGCTGTA TTTCCTTGCA 
TTTCAAGCAG GCTGGTTCCC GTTACGACAC GCCTATAGCG ATGCGCTATC GGTTGATTGG 
GGCAGCCTCA CCTTTATAAA GAGTGTTATC TCGCACATGA TTTTGCCAGC AAGCTGTATT 
GTGCTGGCCT CGATTGGCGG TTGGATGCTC GGCATGCGCA ATACCATGGT TGGGATTCTC 
TCCGAGGATT ACATCACCAT GGCGCAGGCT AAGGGTTTAT CGCAACAACG AATTATGTTT 
AGCTATGCTG CCCGCAATGC CTTATTGCCA AATGTTACCT CGTTTGGGAT GGCACTCGGC 
TTTGTGCTCA GCGGCTCCTT GCTCACCGAA ATTATCTTTG CCTATCCAGG CTTGGGCTAT 
TTGCTGTTGC AAGCAGTTCG CAACTTGGAT TACCCATTGA TGCAGGGCTT GTTTTTGATG 
ATTACGTTTG CGGTGCTTGG GGCCAATCTG TTGGTTGACA TATTGTATGT GTGGCTTGAT 
CCACGCACTC GACGCTAG
 
Protein sequence
MRFLLRRLGF YAVAAWVSLT VNFYLPRLMP GDPASAIFAR FQGRLRPEEI DSLRKAYGLS 
DAPLLEQYFN YLRSLSRGEF GISINFFPAQ VTDVISTGFM WTILLAGLAT VISFFLGNVL 
GIIGAWRRNG ILDSVAPPLL TFIGAFPYFF LAMIALYFLA FQAGWFPLRH AYSDALSVDW 
GSLTFIKSVI SHMILPASCI VLASIGGWML GMRNTMVGIL SEDYITMAQA KGLSQQRIMF 
SYAARNALLP NVTSFGMALG FVLSGSLLTE IIFAYPGLGY LLLQAVRNLD YPLMQGLFLM 
ITFAVLGANL LVDILYVWLD PRTRR