Gene Haur_1960 details

Gene Information

• Locus tag: Haur_1960
• ID: 5733849
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Herpetosiphon aurantiacus ATCC 23779
• Kingdom: Bacteria
• Replicon accession: NC_009972
• Strand: +
• Start bp: 2388556
• End bp: 2395680
• Gene Length: 7125 bp
• Protein Length: 2374 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 641279104
• Product: two component regulator propeller domain-containing protein
• Protein accession: YP_001544731
• Protein GI: 159898484
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG3292] Predicted periplasmic ligand-binding sensor domain

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGTTGGC GCAAATTCTA TCTCGTGATG ATCGTTATAT TGTGGCTTGG TTGGCTCGTG 
CCACCGCGTG CCACCCACAT TGCACCAGTC CAAGCGGCTG AAGCTCAACT CCAAACTAGC 
CAAGCCAGCA GTAGCGATGC TGGTCAAGCC GCCGGATTCA GCAACAGCTA TGCAGCTGTT 
CCATTGGCGG CAACCCCCAA TTTTGCTGGC AATTGGTCGC TTGAAGCCTG GGTTTACCCA 
ACCACAACCT CAGGCTGCCG CAATATTTTG GGCATGAATT ATAACAATGG CCTGTGGTTT 
GGCCTGTGTG GCGGCTTCTT GCGGGCGCAT CGCGGCACGG CCACGTTTGC CCAAAGTGCC 
GCTGCCGTGC CAGCCAACCA ATGGTCGCAT GTGGCGGTCA GCACCTACTA CGATAACGAC 
GGCGAGCAAT ATATCGCCGA ATTTTTTATC AATGGCGAGC GCGAGGGTTT TTATCCGCTC 
GATGGTGATG GCACGGTTTC AACCGCCCGC GAACTGCGGA TTGGCAACGA TGCAGGCGAT 
TTTTGGCTGG GGCAGTTGGC CGAAATTCGG GTGTGGAATT ATAGTCGAGG TGAATACAAC 
ATTCGGCGCG ATATGCACTC GACGCTTGAT CAAGCTCCAG CTGGTTTGCT GGCGCAATGG 
CATTTAACCA ATGGCTCGTT GCGCGATAGC ATCAGCGATG TGGCGGCAGT GGCCCAAGGC 
TCAATCAGTT TTTCGGGCTT TGTCTCGCCT GCCTTGCCCG CAACCACGCC AGTTGATCAA 
TATTTTAATA GCTTGGAGCT TCGCAGCTAC GGCGCGACCA GCGTTTATCT GCCTAGTAGC 
GATGAGGCGT TGTTGATTGG CGGCTATCGC GAAGGCTCAG TGAGCGCCAC AATTCATGCG 
ATTAACGCTG GCGATGGCAG TAGCCAAATT CGCGGCAACT TGCCAGTGCC GTTGGCCTTG 
ACCAGCGCGG CCTATGCCGA ATCCAACAAT ACGGTCTATG TTTTTGGGGG CAGCCTCGAC 
AACCAACATG CCACCGTCGA TACAATTTAT GCGCTCAATC CACAAACTGG CGAGGTACGC 
ACCCTCGCCG CCCGCTTGCC GCAGGCGCTT GATCTCGCGG CGGTGGTCTA TCATCCAATT 
CTCAACAAAA TTGTTATTTT AGGTGGTTAT ACCCCGGCGC TTGGCCCGCT CGATCAGATT 
GTGGTGTTTG ATGTAGCTAC TGAATCAATT TCTATATCAG CTAGTATTCT GCCAGACAGA 
ATTTATGCTG CAAATGCCGT TTATTCTAGC GCAACCCAAA ATATCTATTT AATTGGCGGA 
ACTAACGCAA GCGCTAATTT CGCTACGATT ACTGAATTGG TGCTTAATGC TGATTCAAGC 
GTTAGCGCGA CAGTGCTGGC TGCCCAATTG CCCAAGCCTG ATACAGCCTT AGTAAGTTTT 
GAAGATCCAA TCAGCAAATT GATTTATGTG ATGAATGGAC GGGCAACCAA TCGGGTTGTG 
GCGTTTGATC CCCAAACTGC GCAAGTTTGG CGCACGCCCT TAGAATTACC GACCAATAGT 
GTTAACACGG CAGCAGCCTA TTTGCCAGCA GGCTCGAAAA TCCAACCATT TGCCAGCGCG 
ATCTATTCGC CACGCCAGCG CCATGCCCTG ATTCTGGGCG GCGGCGAGTT TGGCGGCTTC 
GGCACCAATA GCATTTGGCG CATTTATTTG GGCGATGGGC CGTTGGTGCA GCTAGGGCGT 
TGGGATTTCC AAGGCTTTGC GGGCGGCACG GTTCAATCGA TTGATGGTGA TGGAGCCAAT 
TTGTTGGTTG GCAATAGCGA TGGTATGTGG CATTTCAGCG AATCAGCCAG CATCCCAACC 
AATGCCCCAA CCCAGCAATT TTACCCAGCC ACTGCCGCCG TTGGCAGCGT TAACTGGGAT 
ACATTCAACA GCGTGGCCTA TTTTGGCGCA GGCAAAAACG TCTATCGCGG CCAAAACGGC 
GGTTCTACGC TGATCTACGA TGGCAGTTGG ATGGCCAATG GTACGGTGAA GGCACTGCAT 
ACTTTGGCGA ATGGCTTGCC AGCGATTGGG CGCGACACGA TTGGCAGCAC AGCAATCGCC 
TCGTATCAAG TGCCCAATGG CTCGTTGGGT AACTACACCT ACCAAAATGT TGGGCCTGGC 
TGCTCGCAAA CTACCTCAAT TCGCACCAGC CCGCGCTCAA CTCCACTCTT TCTAGAATAT 
TGGGCGATTA ACCAGTTGGT CAATAATTGT GGCCCGCATC GCCAGAATTT TGGCGCACAG 
CTGCCACCCG AAGATTATTA CCCACGGCTG TATCGCGTGC GTAAGCTTGC CGCAGCCAAC 
ACGAGTTGGG CGGTGGTTGA TTTTGGGGTC TTGTGTAATG CCTTGCCATT TCAGGCTCGC 
ACCATGGCAA TTGGCCAAAA TGGCGATTTA TGGGTTGCTG GCGATACGGG CGTTTGTCGC 
TATCCAGCCG CCAATTTGCC CGATAGTGCC AACCCAGTTT TCAATATTTT CGATCTGCCC 
TATGCCAACA ACGCCCATCA GGTCGATGTT GATGCTGATG GCCGCATTTG GTTTAGCAGC 
GACAATGGCC TAAGTGCTTT TGAAGTGCGC CGCGATGGTC AAGCCCCGGT TGCCAGCCTT 
CGTGCCAGCG ATTTTACCCA TCTAAACGCC CCAATTGGCG CAAAAACAGG CTTGAGTGGG 
CTGGCTGCGC TGAGTGCGGT TGGCGAAAAA GTTTATACGG CCCGCAACAA TATGCTCTAT 
AGCCATGCCC CGCGCTGGAA TCAATTTGAT ATGGGTGCTG AAATTGAGCG TTTATGGACG 
GTGCGTGGGC GCTTGTTTGC CGCAACCGCC ACGATGCTGC ATGTGCTTGA GCCAGATGGC 
CTGACGTGGC GACATTATGC CGTGACTGCC TATGATGTTG AAGCCGACCA CCAAGGCCGA 
ATTTGGGTCG CGCATAGCAA CGGCGTTCAG CTTTGGCAGC CAACCGCAGC TTGGCAGGAT 
GTAGCAAATC TCAGCCTGAG CGAACCTGTC TATAGCCTTG CCGCTGATGC TACTGGCCGC 
ATGTGGCTGG GCTTGGGCGA TGGCGTAGGC TTGTATGATC GTGGGCGCTT GGTAACTCGC 
TTGGCGTTGC CATTGGTTGG AACTCACGCA ACCAGCTTAT TGGTTGGCAT TGATAACGCC 
TTGTGGGCAG GAACGAGTAA TGGGATAGCC CGTTTCGATG CAGTTACGGC CACATGGCAG 
GAGTTTAGCG TAGCCAATGG TGGCTTGCCA GCCAGCGATA CAATTACTGA TCTGTTGGAA 
CGCCCTGATG GCAGCATTAT TGCCAGCACA ACCACTGGCT TGGTGCGTAA ATCGCTGACA 
GCCAATAGTT TTGTTGCGGT TGCGGGGAGC ACTCGCCCTG CACGATTAGC CAACGACGAA 
CGCGGGCGTT TGTGGGCGGG AGCCAGCGTC GAAACCCAAG CCAACGTTTG GCAATGGTTT 
TATTGGGCCA ACAGTGGCAT TCGTTCGAAC AACGTGCGAG CAATCGCCGC CGATCAGAGC 
GATCGGGTTT GGTTTGCCCA TCCTGATGGT GGCATTAGCG TGCGTGGAGC ATTCTTGCCA 
CCGTTGGCCG AAGAAATTCC AGTCATCAGC CAGATTACCC CAACCAGCGC GGCCTATGGT 
CAGGTCGTTG AGATTATTGG CTCGGGTTTT GGCAACGACC TGAATTTAGA TGTTCAGATT 
GGTGGAGCCA CTCCATCATT AATTTCAGTC TCGCCGACGC TGATTCGCGT GGCGATTACT 
AAACATAATC TGAGTGGCAC GGTGAATGTG CGGCGTGGCT TGCGACGAGC GAGCCTTGGC 
ACAAGCAGCA ATCCAGCGTT TTGTGCCATT CCAACAATTA AACATATTTT CCCGACTGGT 
ACAAATGTTG GTGGCATTAT CACAATCAAC GGCTCTAATT TTGATCCCAA TGCGATGATT 
AGTATGGGAA CTGGCACGCC ACGCCGTGGA GTGCAAAGCT CGATCGCCGC GCAGCATCAG 
GTAACCAGCG GCGATACATC GGGCAACTTA TTGGTGCAAA ATAGCTGTGC TGGTATGCAA 
GCTCAGGTTG GCGATGTGCG CCGAATTAAC CTGGGAATTA ATCAGGTGCA ATTAAATCAA 
GGCTATCTCG GCTTTGCCCC GCTGGACAGT AATAACCCTC AGCGCCAAAA ATTATGGTCG 
AATAACGCCA CCATGGCTTC GGTGTTTGTG CATACCAGCC AAGCTTTGCG TCCAACCGAT 
CGCTTGATGC TTGATCAAGT ACTGGTGCGC ATGGGACAGA CTGGCCAGCC GAATCGGCGC 
GATTATGCTG TGCCAGTTTC GTATAGCGCC TTGCCAACTA CGGTTGGGCT ACCGCCAGCC 
GCTACGTATC GCGATGTGGC GAATGCGCTG AATGTGCCAA ATATTATTTA TCCCGCTGAT 
GGCCCGACCA CAGTTGATGT GTTGCTCAAG AATGGTAGTG CCATTGCGAC GAGTACCAGT 
TTTGAGGTCG ATGTTACCCC AACTGATCCC ATTCGCTTGC TGTTGGTGCC GGTTGTGCCC 
GACGCAATGA GTGCTAGCGC GATTAAGCAA TGGCTCGACG CAATCGAACC AAACATGGCG 
GATTTTCGCT GGCGGGTGTT TCCTGGTGGC ATTGCTCCAA TCCGGTCGAG TATTACGATT 
CCGTCAACTG CGATTAGTGA ATCTGGGATG TTTAAGGTTG AAGATGGCGA TGCCTTTGAC 
GAATTTGGTA TGCAGCTTGA AAATAGCCGT TTACGCTATA ACGCCTTAAA CAAGGATCGG 
ATTATGGTCG CGATGGGCGT GATACATCCA AGCGTGGTTG ATCCTGAGAG TAAAGCCGCT 
GGGATGGGAC GGCTAGGCCA AAATGGCGAT TGGTCGCCAG ACCCTGAGTG TGAAAACGCT 
GGTTATTATC TTAGCCAAGC AGGGCAAGAC GATTGTAATG ATGAAGATCC GCGCTTTTTG 
GGCTGGGGGG TTGGCGATGG CAATATTGGC AAAACGCTAG CCCACGAGCT AGGCCATATG 
ATGGGGATGG TTGAGGAAGA TCAGCCTACC TATATCGATT ATGGCATGCC TGGAGGTGAT 
AATCACTCCA AGACGAGCGA GCTACGCTAC ATCACCAGTC TTTTGCCATC AAATTGTGGC 
GGCGTTGATC CGGCGATCTT TTCAGCGGAT TTGACCTTGG TGCGCCAACC AGGTGTCAGT 
GAGCCGATGG TCAATCCAAT TACTGGAGCA CAATTGCCCA ATGTTTTGGA TGGAACCAGC 
GAATCATCGG TGAATCGGCC CAAGGCTATT TTGAGTTATG CCTGTAATCG TGGCAATGCT 
AATAGCTTTT TCGAGCCAAC CGATATTAGT TTTATGCGCC GCGAACGTTT CGGCGTGCTC 
CGCCCGCTGT ATGAATTTGC CCCTGAGCGT GAACGGTTGG CAACGCCCAA CGACGAGCCA 
GAACGTTTAC ACATCGCAGG CAGTATTTCA CCAATTGCTG GAGCAATCGC TGGCACAATT 
GACCATGTTG AATTAAAGCC CGCTACCAGT GCCAAAAGCC TCGATTATCA AACCAATTAT 
CAGTTGGTGC AATACGATGC TGAGGGCAAC GAACTTGCGC GACGCGGTGT ACTGGCAACC 
TTCCATGTGC CGCCGCATAA CCACGAGCCT GGCACGCCAA TTATTCACGA TCATCCAAAT 
CAACTCAAAG GCTTGTTCTC GGCCACAATT CCCAAGGCCG AGGGCGTGGT GCGGGTTGAT 
TTAGTGCATC AACAAAGCCA ATTAGCCACT TGGAGCGCCG GCCCGACTAT TCCCAGCGTG 
AGCATTAGCA GCAATTTGGC GCAGCGCTAT CTAGCTGATC AACAAATTGG CTTTGCTTGG 
CAAGTTACTG ATGCCGATGG CGATCCGTTG GCAGTTTCGA TTGAATGGAG CGCTGATGAT 
GGCGCAACCT GGCAAGCGAT CGCCAGTGCT ACAACCAGCG GTAGCCGCGA GATCGATCTG 
GCCCAGTTGG CTGGTACGAG TAGTGGGCGT TTGCGGGTTT GGGTCAGCGA TGGCTTGCAT 
GCTAACAGTG CTACCAGCGA ATTGTTGAGC ATCGCCGATC AAGCGCCGAG TGCGGCGATT 
ATTGCGCCAA GTGCGAACGC CCAGTTGCTC GAAAACCAAG CGATCAGCTT CTTGGGCATG 
GCCAACGATC CGCAAACTGG CGTATTGAGC ACGAGTGCTA GTTTGCATTG GTTTAGCGAC 
CGCGACGGCG ATCTTGGCAG TGGCGCGGAA TTGTATCGCC AACTCAGCGT TGGCCAGCAT 
ACAATTAGCC TGACCGCGAT CAATCCGGCT GGCCTGCAAA CCGTTAGCAC TACCACGATC 
GAAGTGCTGG CCGATTACGA TGGCGATGGC TTGCGCGATC AACAGGAGCT TGATTTAGGC 
CTGAATTTGC TGAACGATCA CGATGCCTTG GGCGATGCTG ATGGTGATGG CTTGAGCTAT 
CGAGTCGAAC TAGTGCGCCA GACTGATCCG AACAATCCGG ATACTGATGG CGATGGTCGC 
TCTGATGCTA GCGAAGTTGA GGATGGTGGC GATCCCTTGA CGAGCGATGG AGCGCCCGTT 
GATCAATTGC ATATTTGGCC GCCAAGCCTT GAATTTGAGG TCGATTTGGC CCAAGATATT 
CAGTTGCCCC AACGCGCCTT AACCTTGCTG AGTCGAGCGG GAACCGATGT AACCCTCTCC 
AGCGATGCTG CTTGGCTTGA TCTCAGCCAA GTCAGTGGCA CAACGCCACT GGCGATCACG 
GCGGTGCTGA ACCCAAGCTT ATTGCGCAAC GGCAGCCAAA CCGCCAACAT TAGCATAAAC 
TCAAGCCTTG GCAATTTCAG CATTCCAGTC ACGGTTAATG CTAGCAACAA AGCCGATTTC 
TGCGATGCCA ATGGCACTGG CGGCCTGACC GCAGCAGATG TGGCGGCAGT GCAGGCCTTG 
GTTGGGGCTA GTGTTGGTGA TGAATTGTAT GATTATCGCG CTGATATTAA TCGTGATGGC 
ACGATTGACC AAAGCGATGT CAATGCGCTC AACAGTTGTA TTCAAGAACT GAGCAACGCA 
ACGCCGCATA TCATCTATCT GCCAGCAATT CAGCGCCACT GGTAA 

 

Protein sequence

MRWRKFYLVM IVILWLGWLV PPRATHIAPV QAAEAQLQTS QASSSDAGQA AGFSNSYAAV 
PLAATPNFAG NWSLEAWVYP TTTSGCRNIL GMNYNNGLWF GLCGGFLRAH RGTATFAQSA 
AAVPANQWSH VAVSTYYDND GEQYIAEFFI NGEREGFYPL DGDGTVSTAR ELRIGNDAGD 
FWLGQLAEIR VWNYSRGEYN IRRDMHSTLD QAPAGLLAQW HLTNGSLRDS ISDVAAVAQG 
SISFSGFVSP ALPATTPVDQ YFNSLELRSY GATSVYLPSS DEALLIGGYR EGSVSATIHA 
INAGDGSSQI RGNLPVPLAL TSAAYAESNN TVYVFGGSLD NQHATVDTIY ALNPQTGEVR 
TLAARLPQAL DLAAVVYHPI LNKIVILGGY TPALGPLDQI VVFDVATESI SISASILPDR 
IYAANAVYSS ATQNIYLIGG TNASANFATI TELVLNADSS VSATVLAAQL PKPDTALVSF 
EDPISKLIYV MNGRATNRVV AFDPQTAQVW RTPLELPTNS VNTAAAYLPA GSKIQPFASA 
IYSPRQRHAL ILGGGEFGGF GTNSIWRIYL GDGPLVQLGR WDFQGFAGGT VQSIDGDGAN 
LLVGNSDGMW HFSESASIPT NAPTQQFYPA TAAVGSVNWD TFNSVAYFGA GKNVYRGQNG 
GSTLIYDGSW MANGTVKALH TLANGLPAIG RDTIGSTAIA SYQVPNGSLG NYTYQNVGPG 
CSQTTSIRTS PRSTPLFLEY WAINQLVNNC GPHRQNFGAQ LPPEDYYPRL YRVRKLAAAN 
TSWAVVDFGV LCNALPFQAR TMAIGQNGDL WVAGDTGVCR YPAANLPDSA NPVFNIFDLP 
YANNAHQVDV DADGRIWFSS DNGLSAFEVR RDGQAPVASL RASDFTHLNA PIGAKTGLSG 
LAALSAVGEK VYTARNNMLY SHAPRWNQFD MGAEIERLWT VRGRLFAATA TMLHVLEPDG 
LTWRHYAVTA YDVEADHQGR IWVAHSNGVQ LWQPTAAWQD VANLSLSEPV YSLAADATGR 
MWLGLGDGVG LYDRGRLVTR LALPLVGTHA TSLLVGIDNA LWAGTSNGIA RFDAVTATWQ 
EFSVANGGLP ASDTITDLLE RPDGSIIAST TTGLVRKSLT ANSFVAVAGS TRPARLANDE 
RGRLWAGASV ETQANVWQWF YWANSGIRSN NVRAIAADQS DRVWFAHPDG GISVRGAFLP 
PLAEEIPVIS QITPTSAAYG QVVEIIGSGF GNDLNLDVQI GGATPSLISV SPTLIRVAIT 
KHNLSGTVNV RRGLRRASLG TSSNPAFCAI PTIKHIFPTG TNVGGIITIN GSNFDPNAMI 
SMGTGTPRRG VQSSIAAQHQ VTSGDTSGNL LVQNSCAGMQ AQVGDVRRIN LGINQVQLNQ 
GYLGFAPLDS NNPQRQKLWS NNATMASVFV HTSQALRPTD RLMLDQVLVR MGQTGQPNRR 
DYAVPVSYSA LPTTVGLPPA ATYRDVANAL NVPNIIYPAD GPTTVDVLLK NGSAIATSTS 
FEVDVTPTDP IRLLLVPVVP DAMSASAIKQ WLDAIEPNMA DFRWRVFPGG IAPIRSSITI 
PSTAISESGM FKVEDGDAFD EFGMQLENSR LRYNALNKDR IMVAMGVIHP SVVDPESKAA 
GMGRLGQNGD WSPDPECENA GYYLSQAGQD DCNDEDPRFL GWGVGDGNIG KTLAHELGHM 
MGMVEEDQPT YIDYGMPGGD NHSKTSELRY ITSLLPSNCG GVDPAIFSAD LTLVRQPGVS 
EPMVNPITGA QLPNVLDGTS ESSVNRPKAI LSYACNRGNA NSFFEPTDIS FMRRERFGVL 
RPLYEFAPER ERLATPNDEP ERLHIAGSIS PIAGAIAGTI DHVELKPATS AKSLDYQTNY 
QLVQYDAEGN ELARRGVLAT FHVPPHNHEP GTPIIHDHPN QLKGLFSATI PKAEGVVRVD 
LVHQQSQLAT WSAGPTIPSV SISSNLAQRY LADQQIGFAW QVTDADGDPL AVSIEWSADD 
GATWQAIASA TTSGSREIDL AQLAGTSSGR LRVWVSDGLH ANSATSELLS IADQAPSAAI 
IAPSANAQLL ENQAISFLGM ANDPQTGVLS TSASLHWFSD RDGDLGSGAE LYRQLSVGQH 
TISLTAINPA GLQTVSTTTI EVLADYDGDG LRDQQELDLG LNLLNDHDAL GDADGDGLSY 
RVELVRQTDP NNPDTDGDGR SDASEVEDGG DPLTSDGAPV DQLHIWPPSL EFEVDLAQDI 
QLPQRALTLL SRAGTDVTLS SDAAWLDLSQ VSGTTPLAIT AVLNPSLLRN GSQTANISIN 
SSLGNFSIPV TVNASNKADF CDANGTGGLT AADVAAVQAL VGASVGDELY DYRADINRDG 
TIDQSDVNAL NSCIQELSNA TPHIIYLPAI QRHW