| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_0244 |
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| Symbol | rpoB |
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| ID | 5732139 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009972 |
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| Strand | - |
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| Start bp | 282293 |
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| End bp | 285946 |
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| Gene Length | 3654 bp |
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| Protein Length | 1217 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641277368 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001543024 |
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| Protein GI | 159896777 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGCAAG TTCAGTCAAC TGTTATCCTG CCACCGCTGA TCACGTCCAG TATCTTCCGC
GATGACCAAG GTCGTGCGAT GATCGCATCA CGTCGGAGTT TTGCTCGCAT TACCGATGCG
ATTGAATTAC CGAAGTTGAT CGAAACCCAG ATCGATTCGT TTCGCTGGTT TCAACGTGAA
GGGCTACGTG AATTGTTCGA TGAAATTAAT CCCATCGACG ATTTCACGGG CAAAAACCTA
GAGCTTTCGT TTAGCGATTA TGAGTTCGGC GAACCCCGCT ATAACGAATT TGAGTGCCGT
GAACGTGATA TGACCTACGC CGCCCCCCTG CGGGTTCGCG TGCGCTTGAA GGTCAAAACT
ACCGGTGAAA TCAAGGAAAG CGATATCTTC CTTGGTGACT TCCCATTGAT GACCAATAAT
GGGACGTTTG TGATCAACGG CGCAGAACGG GTTGTTGTGT CGCAGTTGAT TCGCTCACCT
GGCGTGTATT TCAAGGAAGA AAAAGAGCCA ACCAGCGGTC GTTCGCTCCA CAGTGCTAAG
TTGATCCCCA ACCGTGGTGC TTGGCTGGAG TTTGAAACGA ATAAGCGCGA TGTGCTTTCG
GTCAAGGTTG ACCGCAAACG TAAGTTGCCA GTCACGATCT TGATCCGCGC GGTGCTCGGC
TTATTTGGCG ATAAACCACT CGATCAATGT GGGCTGAATG AAGACGTTAT CGCCTTATTC
GCCAATGTCG ATGTTAACCG CGACCACCAA TATATCGCTT CAACCTTGGA TAAAGATCCA
TCAACCAATG CCAAAGAAGC GATTATGGAA TTGTACAAGC GCTTGCGCCC AGGCGATCCA
GCAACTGTCG ATAACGCCCG TTCGTTATTG GAAACCTTGC TGTTCAACGC CCGCCGCTAC
GACTTGGGCA AAGTCGGTCG CTATAAATTA AATCGCAATC TGTGGGAAAA AAGCCGCCTC
TTCGAAGGCC AAGAAATTCC CAGCCTAACC ATGCGCGTGC TCAGCAAAGC CGATTTGTTC
AAAATCGTCG AGCGCTTGAT CGATCTCAAT AATGGGATTG GCAACCCCGA TGATATTGAC
CACCTCGGTA ACCGCCGCGT GCGGACTGTC GGCGAATTGA TTCAAACCCA ATTCCGCGTC
GGTTTGCTGC GTATGGAACG GGTGATCAAA GAACGCATGT CGTTGCAAGA ACCAGAAGCT
GCAACTCCCA ATGGCTTGAT CAATATCCGG CCTGTGGTTG CCGCTATGCG CGAGTTCTTC
GGCGGTTCGC AACTTTCCCA GTTCATGGAT CAAACCAATC CATTGGCTGA GTTGACCCAC
AAACGCCGCC TTTCAGCGCT TGGCCCTGGT GGTCTGAGCC GCGACCGTGC AGGCTTTGAG
GTTCGCGACG TTCACCACTC GCACTATGGC CGGATCTGCC CGGTTGAAAC GCCTGAAGGT
CCAAACATCG GTCTGATCGG TACGATGTCA ACCTTTGCAC GGGTTAACGA AATGGGCTTC
CTTGAAACGC CCTATCGCCG TGTCTATCGC GAAGTTGATA ATGCCCCGCT CTGGCTTGAA
CGTGGCATGA CTACCCGCGA TGTGCGCCAC CTCAGCACTG GCGAGTTGAT CGCTCGCGCT
GGGGCACGGG TCGATGCTGA ATTAGCCAAA ATCATTGCGA TCGGTGTGCT CAATGGACAA
TTGCTGCGTG AAGATATTGT CAACCCAGCG ACTGGCGATT TGATTGCCGA AGCTGGTTCA
GAAATTGACC GCGCCTTGGC AACCAAAATT GCCGATTTGC CCTTACGTGC AATCAAAATT
CACCCAGTTG TCACCAATGA AACCGACTAT TTGCCAGCCG ATGAAGAAGA TAAGTTCATC
ATTGCCCAAG CTAACGCTTT GCTTGACGAA CGCTTCCGCT TTATCGACCC AACGGTTTCA
TGCCGCCATG CTGAAGATTT CGTCCAAGCT CCAATCGCCT CGGTCGATTA TATGGACGTT
TCGCCCAAGC AGGTGGTCAG TGTTTCAACC GCGTTGATTC CGTTCTTGGA ACACGACGAC
GCAAACCGTG CCTTGATGGG TTCGAACATG CAGCGCCAAG CTGTGCCGTT GTTGCGCCCT
GATGCGCCAA TTATCGGTAC TGGCATGGAG CACAAAGCCG CCCGCGACTC AGGTCAGGTG
GTTGTGGCTC GTGCCGATGC TGTGGTGCTT TCATCGAATA GCGAACGCAT TTTGGTTCGC
GAAAACGATG GCACTGAACG CACCTATCCA TTGCTCAAGT TCTTGCGCTC GAACCAAGAT
ACCTGTATCA ACCAACGCCC AAGCGTCTTT ATTGGCGATA AAATTCGGGC TGGCGAGGTA
ATTGCCGATA GTTCTTCGAC CCAAAATGGC GAGCTAGCGC TTGGCCAAAA TATTCTCGTG
GCCTACATGC CTTGGGAAGG TGGGAACTTC GAAGACGCGA TTTTGGTTAG CGAACGCTTG
GTACGCGAAG ATATTTTCAC TTCGATTCAC ATTGAAAAAT ATGAAGTCGA AGCTCGCGAT
ACCAAACTTG GCCCCGAAGA AATTACCCGC GATATTCCTA ACGTCGGCCA AGATAGCCTT
AAAAACTTGG ACGAACGCGG GATTATCTAT GTTGGTGCTG ATGTTCAGCC AAACGATATT
TTGGTTGGCA AAATCACACC CAAGGGCGAA ACTGACCTGA CCGCTGAAGA ACGGCTCTTG
CGAGCTATCT TCGGTGAAAA GGCCCGCGAA GTTAAAGATA GTAGCTTGCG CGTTCCCAAC
GGGGTCAAAG GTAAAGTCAT TGATGTCAAG GTCTTTACCC GCGACGAAAC AACTGAAATG
CCTGTCGGTG TCAATCAAAC GGTGCGGGTG ATGCTCTGTC AAAAGCGCAA AATCAGCCCA
GGCGATAAGA TGGCAGGCCG CCACGGCAAT AAAGGCGTGG TCAGCCGCGT GCTGCCAATC
GAAGATATGC CATTCTTACC CGATGGCACG CCTGTTGATA TCGTCTTGAA TCCGTTGGCG
GTGCCAAGCC GCATGAACAT CGGCCAGATT TTGGAAACTC ACTTGGGTTG GGCTGCTTCA
CGCTTGGGCT TCCGTATCGC CACGCCAGTC TTCGACGGCG CACGCGATGA GGATATTATC
AAAGCTCTCG CTGAATCAGG CCTGCCATCC GATGCCAAGA TCGATCTCTA CGATGGCCGC
ACTGGCGAGA AATTCGATAA TCCAGTGACC GTCGGTTACA AATATATGCT CAAGTTGGCG
CACTTGGTGG AAGATAAGAT CCACGCTCGC TCAACTGGCC CTTACAGCTT GGTGACTCAA
CAGCCACTCG GCGGTAAGGC TCAGTTCGGT GGTCAGCGCT TTGGTGAAAT GGAAGTTTGG
GCGCTCGAAG CCTATGGCGC TGCTTACATT CTCCAAGAAA TGCTCACGGT CAAGTCCGAC
GACGTGGTTG GTCGGGTCAA AACGTATGAG GCGATCGTCA AGGGCGATCC AATCAACGAA
GCCGGCGTAC CTGAATCGTT CAAGGTCTTG ATCAAAGAGT TGCAATCGCT TGGTCTGTCG
GTCGATGTGT TGACCGCTGA TGAACGCCCG GTTGAGCTAA CCGATAGCGA AGCCGATGAC
TTAATCTCAC TCGACGGCAT CAACCTGTCG GGGATGGAAA AAGGCGAACT CTAA
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| Protein sequence | MPQVQSTVIL PPLITSSIFR DDQGRAMIAS RRSFARITDA IELPKLIETQ IDSFRWFQRE
GLRELFDEIN PIDDFTGKNL ELSFSDYEFG EPRYNEFECR ERDMTYAAPL RVRVRLKVKT
TGEIKESDIF LGDFPLMTNN GTFVINGAER VVVSQLIRSP GVYFKEEKEP TSGRSLHSAK
LIPNRGAWLE FETNKRDVLS VKVDRKRKLP VTILIRAVLG LFGDKPLDQC GLNEDVIALF
ANVDVNRDHQ YIASTLDKDP STNAKEAIME LYKRLRPGDP ATVDNARSLL ETLLFNARRY
DLGKVGRYKL NRNLWEKSRL FEGQEIPSLT MRVLSKADLF KIVERLIDLN NGIGNPDDID
HLGNRRVRTV GELIQTQFRV GLLRMERVIK ERMSLQEPEA ATPNGLINIR PVVAAMREFF
GGSQLSQFMD QTNPLAELTH KRRLSALGPG GLSRDRAGFE VRDVHHSHYG RICPVETPEG
PNIGLIGTMS TFARVNEMGF LETPYRRVYR EVDNAPLWLE RGMTTRDVRH LSTGELIARA
GARVDAELAK IIAIGVLNGQ LLREDIVNPA TGDLIAEAGS EIDRALATKI ADLPLRAIKI
HPVVTNETDY LPADEEDKFI IAQANALLDE RFRFIDPTVS CRHAEDFVQA PIASVDYMDV
SPKQVVSVST ALIPFLEHDD ANRALMGSNM QRQAVPLLRP DAPIIGTGME HKAARDSGQV
VVARADAVVL SSNSERILVR ENDGTERTYP LLKFLRSNQD TCINQRPSVF IGDKIRAGEV
IADSSSTQNG ELALGQNILV AYMPWEGGNF EDAILVSERL VREDIFTSIH IEKYEVEARD
TKLGPEEITR DIPNVGQDSL KNLDERGIIY VGADVQPNDI LVGKITPKGE TDLTAEERLL
RAIFGEKARE VKDSSLRVPN GVKGKVIDVK VFTRDETTEM PVGVNQTVRV MLCQKRKISP
GDKMAGRHGN KGVVSRVLPI EDMPFLPDGT PVDIVLNPLA VPSRMNIGQI LETHLGWAAS
RLGFRIATPV FDGARDEDII KALAESGLPS DAKIDLYDGR TGEKFDNPVT VGYKYMLKLA
HLVEDKIHAR STGPYSLVTQ QPLGGKAQFG GQRFGEMEVW ALEAYGAAYI LQEMLTVKSD
DVVGRVKTYE AIVKGDPINE AGVPESFKVL IKELQSLGLS VDVLTADERP VELTDSEADD
LISLDGINLS GMEKGEL
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