Gene HY04AAS1_1319 details

Gene Information

• Locus tag: HY04AAS1_1319
• ID: 6744138
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Hydrogenobaculum sp. Y04AAS1
• Kingdom: Bacteria
• Replicon accession: NC_011126
• Strand: +
• Start bp: 1226461
• End bp: 1228293
• Gene Length: 1833 bp
• Protein Length: 610 aa
• Translation table: 11
• GC content: 33%
• IMG OID: 642751130
• Product: diguanylate cyclase with PAS/PAC sensor
• Protein accession: YP_002121982
• Protein GI: 195953692
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2199] FOG: GGDEF domain
• TIGRFAM ID: [TIGR00229] PAS domain S-box; [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.104887
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAACTTAC TCCCCCCCCC CCCCCCCCCC CCCCCCATAA CTTTTGACGC TCGCGCTTGT 
CCTGGATACG ATCTTATAGA AAATGCAGCA GTAGAAGATG ATATAAAAAA AGAGCTTCAC 
AAAGCTCACG AGAGGATTCA TTGTGCAGCT AAATATTTTT ACAAGCTTAT AGAACAAGGT 
GATATCGACA ATCTTTACGA TATATACTGG AATATAGAAT ATCTAGGCAT CTTGATAATA 
ACAACCGTAG CTCTTCACAA GTTAAAAGAT CAAAATGAAT TTTACAAGAC ATTTTTTGAA 
GGACACAGTA TACCCATGCT TTTTGTGGAT ATAGATACTT ATTCTATAGT GGATGCAAAC 
AAAGCAGCCC TTATGTTTTA TGGTTATACC AAAGAAGAGA TTACGTCTTT GAAAAATTGG 
GATATAAACA TACTTGGCGA AGAAAAGATG AAAGAACTTG TTCACAAAGC AAAACATAAA 
GAGCTAAACT TCTTTAAGTT TAAGCACAGA TTAAAATCTG GCGAGATAAG AGATGTGGAA 
GTTTATTCAT CCCCTGTTCG TCTAAATGGC AAAACTTACT TACTTTCAAT AATAAACGAT 
ATTACAAAAG AAGAGAGAAC AAGAAGAGTC TTGGAGATAT TTAAAGAGAT AGAAAATCTT 
GGCATTACAT CTGATAACGA AGATATATTT TTTGAAAAGC TTTTAGATGT GCTTGAAAAA 
GAGGATATGT TTAAAGATGT ATGTATATTG ATAAGGCACA AGGGCACCGA TGATACGATA 
TCTTCATCAA AGACACGCCT TGAGGACATA GGAGAATCTT TATCCTCTTA TATCATACAT 
ATATTAAAAA ATGGTGATAC ATACGGTTCT ATCAGGCTAT ACTCCAAAAA AGAAAATTAC 
TTCGATGAGT ATCAAGAAAT CTTGCTAAAT TTGAAAGATA AAATAGAGCA TACGCTAAAT 
ACCATAGAAC TAAAGAAAAA ATTAGATTAT CAGAACAAGC TTGTTAAAAG TATCATCCAG 
AATACCAAGA TAGGCGTTTT GGTATTTGAT ATGGATGGTG TTTATTATGC AAATGACTAC 
TTTTTTGAGC TTTTAGGATA CGATTTTGAT GAGCTAAAAG CTTTAACCAT ATTTGATATA 
TTATCACCTA TTCATGTAAA AGACCTTATA GATGCTTTTG CAAACAAAAT GCCTATACTT 
TCACAGGAGT TCCATGTTTT TAAAAAAGAC AATAAAATAC TTTTTGTAAA AGGGACTTTA 
GATTTTATCA GAAATCCTGA AAACAAAGAC AACGCTGTTT TCACATTTGT TGATATTACC 
AAGGAAAAAG AGTTGTCTGA GCTATTGTTA AAACAATCCA TTGAAGATAC TCTTACAGGA 
ATTTACAACA GAAGGTATCT TAAAGATAAA TTAGAAAGGC ATGTAAATTT GGCAAAAAGA 
TACGAAAGAC CACTTAGTGT TATTATGTTT GATATAGATT TTTTCAAGCA TATAAACGAT 
ACTTTTGGTC ACGATGTGGG TGATAAGGTG CTGATAGCTA TTTCAAAAGT GGTATCAGAG 
AACATAAGAA ATACCGATAT CTTTGCAAGA TACGGCGGTG AGGAGTTTAT CATTGTAGCT 
CCAGAGACTA CAAAAGAAGA TGCCAAAATA TTAGCTGAAA AACTAAGAAG TCTTATAAGA 
AATCTTCATT TTGAAGAAGG GATCAACGTA ACTTGCTCTT TTGGCGTGGT GTCGTTAGAA 
AAGCCCGATA CAAAAGAAAC GCTTTTAAAA CGTGTTGATA ATGCTCTTTA CGAGGCCAAA 
AGAACTGGAA GGAACAGGGT GGTAGTATTG TAG 

 

Protein sequence

MNLLPPPPPP PPITFDARAC PGYDLIENAA VEDDIKKELH KAHERIHCAA KYFYKLIEQG 
DIDNLYDIYW NIEYLGILII TTVALHKLKD QNEFYKTFFE GHSIPMLFVD IDTYSIVDAN 
KAALMFYGYT KEEITSLKNW DINILGEEKM KELVHKAKHK ELNFFKFKHR LKSGEIRDVE 
VYSSPVRLNG KTYLLSIIND ITKEERTRRV LEIFKEIENL GITSDNEDIF FEKLLDVLEK 
EDMFKDVCIL IRHKGTDDTI SSSKTRLEDI GESLSSYIIH ILKNGDTYGS IRLYSKKENY 
FDEYQEILLN LKDKIEHTLN TIELKKKLDY QNKLVKSIIQ NTKIGVLVFD MDGVYYANDY 
FFELLGYDFD ELKALTIFDI LSPIHVKDLI DAFANKMPIL SQEFHVFKKD NKILFVKGTL 
DFIRNPENKD NAVFTFVDIT KEKELSELLL KQSIEDTLTG IYNRRYLKDK LERHVNLAKR 
YERPLSVIMF DIDFFKHIND TFGHDVGDKV LIAISKVVSE NIRNTDIFAR YGGEEFIIVA 
PETTKEDAKI LAEKLRSLIR NLHFEEGINV TCSFGVVSLE KPDTKETLLK RVDNALYEAK 
RTGRNRVVVL