| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HY04AAS1_0835 |
|---|
| Symbol | |
|---|
| ID | 6743641 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Hydrogenobaculum sp. Y04AAS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011126 |
|---|
| Strand | + |
|---|
| Start bp | 779708 |
|---|
| End bp | 781693 |
|---|
| Gene Length | 1986 bp |
|---|
| Protein Length | 661 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 642750636 |
|---|
| Product | excinuclease ABC subunit B |
|---|
| Protein accession | YP_002121500 |
|---|
| Protein GI | 195953210 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
|---|
| TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 55 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTTT TCCAATTAAA AAAACATTTA AAACCAGCCG GAGACCAGCC AAAAGCTATT
GATAAGCTGT TATCCAATTT TGAAGCCGGC GCAAAAGCCC AAGTGCTTCT TGGTGCTACA
GGTACTGGTA AAACTTTCAC CATAGCAAAC ATTATAGCCA AATACAAAAA ACCAACACTT
GTATTGGCCC ACAATAAAAC GTTGGCAGCA CAGCTTTACA GAGAGTTCAA AGAACTTTTT
CCAAACAACG CTGTAGAGTA TTTTATATCT TACTATGATT ACTATCAACC TGAGGCTTAT
ATACCAGAAA AAGACCTTTA CATAGAAAAA GATTCTTCCA TAAACGACAT ACTTGATAAA
TACCGTCACA GCGCCACAAA ATCTGTAATC GAAAGAGCCG ATACGATAGT GGTAGCCTCG
GTATCCTGTA TATACGGCCT TGGTTCTCCA GAACATTATG TAAATATGCG TATTCAGCTT
TTAAAAGGAC AAAAACTAGA TCCTTTAAAA TTATCACGTC AATTGGTAGA GATAGGCTAT
GAGAGAAACG ATTTCTCTTT CAAAAGAGGA ACTTTCTCTG TAAGAGGTGG GGATTCCATC
GAAATAGTGC CTTCTCATGC TGATGACATT GTTATACGCA TAGAGTTTTG GGACAATGAA
ATAGATTCAA TAAAAGAGCT CGATTTACTA AATAGACATG TTATAAGAGA AATAGATTAT
ACTGTTTTAT TTCCAGCCAC ACACTATGTA GCCCCAAAAC CAGCCCTTAT GGAAGCTATA
GAAAAGATAG AAAAAGACTT AAAAGCAAGA GTTGAATACT TTAAATCTCA AGGCAAAGAA
ATAGAGGCTC AAAGACTATG GCAAAGGACT ATGTACGATA TAGAGATGAT AAAAGAAATT
GGCCATTGCA AAGGTATAGA AAATTATTCT AGATATTTTG ACGGCAGAAA AGAAGGGGAG
CCTCCTTTTA CACTGCTCGA TTATATGCCA GAGGACTTTT TACTCATAGT GGATGAATCT
CATGTCACCA TACCGCAAGT AAGAGGTATG TACAACGGAG ACATATCCAG AAAACAAAAG
TTAGTGGACT ATGGATGGAG ATTACCCGCC GCTCTAGACA ACAGGCCCCT TAAGTTTGAT
GAGTTTTTAA GAAAAATCAA TAAAGTTATA TTTGTATCAG CTACACCAGG AGATTGGGAA
ATAGAGTTTT CAAAAGGAGT CATAGTAGAG CAAATAGTAA GACCCACCGG TCTTTTGGAT
CCAGAGATAG AAGTAAGACC AACTACAAAT CAGTTGGAAG ATTTGATAAA AGAGATTTTA
AAAGTAAAAG CCAGAAACGA GAGAGCTATA GTTTTAACCA CCACAAAAAG ATTATCAGAA
GATGTAGCGA ATTATCTCAT AGAAAGGCGG ATAAAAGCAA GATATCTTCA CTCTGATTTA
GATGCTATAG AAAGGGCAAA GGCTATAAAA GAGCTCAGAG AAGGCTCAAT AGACGTTATT
GTTGGTGTGA ACTTGCTAAG AGAAGGTATA GATATGCCTG AAGTTTCTTT GGTGGCTATA
TTAGAAGCTG ATAAAGAAGG GTTTTTAAGA AGCACCACTT CACTTATACA AACTATAGGA
AGGGTGGCAA GAAACATAAA TGGCAAAGCT ATGCTTTACG CTGACCGCAT CACAGAATCT
ATGAAAAAAG CCATAGATGA AACAAACAGA AGAAGAGAAA TACAAAAACG CTACAACGAA
GAGCACGGCA TAATACCAAA ATCCATTGTA AAACCTGTTA AAGAGCTTTT AAGCATAGAA
GACTTAGACT ATGTGAAAGT ACCAGATTCT ATACCAAAAG ATATTAAGAC AGAAAAGGAC
TTGGTAGAAC GTTTAAATAA ACTTGAGAAG ATGATGTGGG AAGCTTCTAA AAAATGGGAA
TTTGAAAAGG CTGCAAAAAT AAGAGATGAG ATAAACGAAC TTAAAAAAGT GGCTGGCTTG
TTTTAG
|
|---|
| Protein sequence | MSFFQLKKHL KPAGDQPKAI DKLLSNFEAG AKAQVLLGAT GTGKTFTIAN IIAKYKKPTL
VLAHNKTLAA QLYREFKELF PNNAVEYFIS YYDYYQPEAY IPEKDLYIEK DSSINDILDK
YRHSATKSVI ERADTIVVAS VSCIYGLGSP EHYVNMRIQL LKGQKLDPLK LSRQLVEIGY
ERNDFSFKRG TFSVRGGDSI EIVPSHADDI VIRIEFWDNE IDSIKELDLL NRHVIREIDY
TVLFPATHYV APKPALMEAI EKIEKDLKAR VEYFKSQGKE IEAQRLWQRT MYDIEMIKEI
GHCKGIENYS RYFDGRKEGE PPFTLLDYMP EDFLLIVDES HVTIPQVRGM YNGDISRKQK
LVDYGWRLPA ALDNRPLKFD EFLRKINKVI FVSATPGDWE IEFSKGVIVE QIVRPTGLLD
PEIEVRPTTN QLEDLIKEIL KVKARNERAI VLTTTKRLSE DVANYLIERR IKARYLHSDL
DAIERAKAIK ELREGSIDVI VGVNLLREGI DMPEVSLVAI LEADKEGFLR STTSLIQTIG
RVARNINGKA MLYADRITES MKKAIDETNR RREIQKRYNE EHGIIPKSIV KPVKELLSIE
DLDYVKVPDS IPKDIKTEKD LVERLNKLEK MMWEASKKWE FEKAAKIRDE INELKKVAGL
F
|
|---|
| |