| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HY04AAS1_0574 |
|---|
| Symbol | |
|---|
| ID | 6743370 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Hydrogenobaculum sp. Y04AAS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011126 |
|---|
| Strand | - |
|---|
| Start bp | 514447 |
|---|
| End bp | 515730 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 642750365 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_002121239 |
|---|
| Protein GI | 195952949 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00000581742 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACTTGA AACTTAAAAT TTTTATATCT GGTCTTATCT TAAGTGTAAA CGGGTTTTCT
TTGAGCCTAA AAGAGGCTAT AGATCTTAGT CTAAAGCACA ACACCTTTAT CCAAAAAGCC
AAAAACAACA TCTATATAAA AGAGCAAGAG CGCAAAAAAG CCATAGTGTC AAAACTTGGT
GAGGTAGATC TAAACGCCGA TACATCAAAA TTTAACACCC CAAGGTATCT CATACCCTTT
GTAGTAACGC TTCCAATTTC ACCAAGTTCA ATACCCCCAA GCGCTTACAA TTTGACTACA
TTGTCTTTGT CTTATACAAT CCCTTTGTTT ACTGGTTTTA AGCTTTTAGA AAATATAAAA
ATATCTGATT TAGCACGCAA TATAGCAAGG TACAACTATA AACTCACCAA AAGACAAATC
GTTTTCAACG TATACTCTTT ATATATAAAC GGCATTATCC TAAAAAAAGA TCTCATGGCT
CAACAGGAAA GGCTAAAAGC CTTAGAAAAG TTTTATCAAG ATGTGTCTTT GGGAGTAAAG
CTTGGAAAGT TTGCACCGGT GGATTTGATG AAAGTTCAAT ACGAGTTAGC TCTAACTAAA
GCCAGTATAA AATCCATAAA AGACGATATA GACTCTGTAA AAGCATCTTT AAACACGCTA
ACAGGTTTAA AATCTATAGA TTGGCATTTT GAACCTATCA AGTACAAAGA AGAGCATTTT
GGAAATTTAG AACAACTTAT AAATATAGCC CTAAAAAACA GATATGAGCT AAAAGTGGCA
AAAGAAAACG AATATATTGC CAAAAGAAAG CTTTTCCTGT CCAAAAGTTC ATATCTACCA
AATATTTATT TTAACTACAC ATATTCAAAA ATCATAGGTG GTGGTGCCGA AGAGCCCCAA
TGGAGTTATA ACCTTATGGC ATCTATGCCA ATATTTGATT TTGGGAAAAG GTATTTTGAT
ATACTATCAA CTCACAAAGA ATACCTAAAT ACAAAAAAAG ACTACGATCA AACCGCCCTT
GATATAAGAA AAGAGGTGGT AGATGCTTAT TCAAAATTAA ACTCCGCAAA AGAAAACTTA
AGAGCTTCTC AAAAAGCGCT TGCTTACGCA GAAGAGGTGA TGAAGATAGA AGAACTAAAG
TATAAAACTG GTGCTGGGGA TATGTATGAT ACTCTTTTGG CGATAGCAAA CTTCTACAAC
ACACTTGCAA ATATGTATAA AAATAAATAT ACCCTTTATC TCATGCAAAA ATATATGGAT
TACGTGTTAG GAGAGAAGTT ATGA
|
|---|
| Protein sequence | MNLKLKIFIS GLILSVNGFS LSLKEAIDLS LKHNTFIQKA KNNIYIKEQE RKKAIVSKLG
EVDLNADTSK FNTPRYLIPF VVTLPISPSS IPPSAYNLTT LSLSYTIPLF TGFKLLENIK
ISDLARNIAR YNYKLTKRQI VFNVYSLYIN GIILKKDLMA QQERLKALEK FYQDVSLGVK
LGKFAPVDLM KVQYELALTK ASIKSIKDDI DSVKASLNTL TGLKSIDWHF EPIKYKEEHF
GNLEQLINIA LKNRYELKVA KENEYIAKRK LFLSKSSYLP NIYFNYTYSK IIGGGAEEPQ
WSYNLMASMP IFDFGKRYFD ILSTHKEYLN TKKDYDQTAL DIRKEVVDAY SKLNSAKENL
RASQKALAYA EEVMKIEELK YKTGAGDMYD TLLAIANFYN TLANMYKNKY TLYLMQKYMD
YVLGEKL
|
|---|
| |