| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HY04AAS1_0030 |
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| Symbol | |
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| ID | 6742811 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Hydrogenobaculum sp. Y04AAS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011126 |
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| Strand | - |
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| Start bp | 28417 |
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| End bp | 29304 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 642749813 |
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| Product | Tetratricopeptide TPR_2 repeat protein |
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| Protein accession | YP_002120700 |
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| Protein GI | 195952410 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGTTAT ATAAACTCTT AATTATAGTG ACTTTTTTTG TTGGTATATC TTACGCCGAT
GCTGAGCAAT GCATAAACTT GCTCCGATCT AAAGACTATC AAAAAGCCAT AGACTTGGCA
AATAAATCTC TTAGATGGAA CAAATACGAT TTTAATTACA ACATGTGCGC AGCCATGTCT
TACATTGCCT TAGGAGAGCC AAAATATGCT ATACCTTATT TGAAAAATGC CACAAAAAAC
GCAAACACTC GTTATCAAAA AGAAGCACTT TACAACTACA TGGGTGTTAG TTACGACATG
ATTGGCGACA AATCAAAAGC ACTAGACAAC TATACAAAAG CTTATAAATT AGCAAAGTCT
CTTGGAGATA GCAACGGAAT AGTAGACAAC CTCTCAAATA TAGCTCATAT ATTTTATTCG
GAAGGCTATT ACAATTCCGC AATAAAGTTT TATAAAAAAG CCTTAAAACA AGACCTTCAA
AGTCCCACCA TACTAAACAA CATAGCCCTT TGTTATGCAG ATTTAAACCA CCCTCACAAG
GCTCTTCTAT ATTACGAGAA ATCCTCCCAA GCTTTCGATG AAAAAGGTGA TAAAATTCAC
GAAGGCGCCA CTTATCTAAA TATGGGTGTT TTGTATCTTA AGCTTTTAGA TTTTAAAGAT
GCAAAAACAT ACATACAAAA GGGTTTAAAC TTAGTAAACA GCAACAAATA CTGGGAAGCA
GTTGGTTATC AATATATGGG CTGGTATTAC GATAACAAAA ATGAAAGCGA TAAAGCAATG
ATTTATTACC AAAAAGCCTT AAAACTTGCA AATGAAATAG GAGCTAAAGG TTTAGCAAAC
TCTATACAAA AAAATCTATC ATCAGAGGAG GTAGCTAGTG AGTATTAA
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| Protein sequence | MKLYKLLIIV TFFVGISYAD AEQCINLLRS KDYQKAIDLA NKSLRWNKYD FNYNMCAAMS
YIALGEPKYA IPYLKNATKN ANTRYQKEAL YNYMGVSYDM IGDKSKALDN YTKAYKLAKS
LGDSNGIVDN LSNIAHIFYS EGYYNSAIKF YKKALKQDLQ SPTILNNIAL CYADLNHPHK
ALLYYEKSSQ AFDEKGDKIH EGATYLNMGV LYLKLLDFKD AKTYIQKGLN LVNSNKYWEA
VGYQYMGWYY DNKNESDKAM IYYQKALKLA NEIGAKGLAN SIQKNLSSEE VASEY
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