Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HS_1573 |
Symbol | speF |
ID | 4241100 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Haemophilus somnus 129PT |
Kingdom | Bacteria |
Replicon accession | NC_008309 |
Strand | + |
Start bp | 1783677 |
End bp | 1785836 |
Gene Length | 2160 bp |
Protein Length | 719 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 638105159 |
Product | ornithine decarboxylase |
Protein accession | YP_719778 |
Protein GI | 113461709 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTAAAAT TAAAAATCGC ACATAGCCCA TTAGTGCAAA AATATTTTAC ATCAACTCGT GAATTAGTTT TATTAAATCA AACTGATTTC ACCGATATAG GTGCAATAAT ATTGACTGCC GAAGATGTTA AGTATATTCA ACAAATAAAA ACGACTGAAT TTAATATTCC TATTTTTGTC GTATTAAATG AAGGTGAAAC ACTTTCTGAT GAATATTTTG ATCAGGTTTA TCATGTTCAA GATCTAAACA GCTATGATAT CAATTTGTAT AGCCGTCAAA TTGAAACAGC TGCGTCTCTT TATGAGCAAA AAATGTTACC TCCATTCTTT AAAATGTTAA GCGAATATGT CGAAATGGGT AATTTGGCAT TTGATTGTCC GGGACACCAA GGCGGTCAAT ATTTCCGCAA ACATCCAGCC GGCCGTTATC TATACGATTT CTATGGAGAA AATATTTTCC GTTCAGATAT TTGTAATGCT GATGTGAAAT TGGGAGATTT ACTAATACAT GAGGGTGCTC CATGTGATGC TCAACAACAT GCGGCAAAAG TATATAATGC AGATAAAACA TATTTTGTGC TAAACGGAAC TTCCGCCTCC AATAAAGTGG TTTGTAACGC ACTACTTGCA CCGGGTGATC TAGTATTATT TGACCGCAAC AATCACAAAT CAAATCACCA CGGTGCTTTA ATTCAAGCGG GTGCAACCCC TGTTTACTTG GAAACTGCCC GTAATCCATT CGGCTTCATC GGCGGTATTG ATAACCACTG TTTTGAAGAA GCATATCTTA AAAAATTAAT CGCAGAAGTG GCACCGGAAA AACTTGAAGA GAAACGTCCT TTCCGTCTTG CAATTATTCA ATTGGGTACT TATGACGGAA CAATTTATAA CGCCAAACAA GTTGTTGAAC GTATTGGACA TTTATGCGAT TACATCTTGT TCGATTCTGC ATGGGTCGGC TATGAACAAT TCATTCCAAT GATGAAAGAT TGCTCTCCAT TATTACTAGA TTTAAATGAA AATGACCCTG GTATTATCGT GACACAATCG GTACATAAAC AACAAGCAGG TTTCTCACAA ACATCACAAA TTCATAAAAA AGACAAACAT ATTAAAGGAC AAGCAAGATA TTGCAATCAC AAACGCTTTA ATAATGCCTT TATGTTGCAT GCGTCTACCA GCCCATTCTA TCCTCTATTC GCCACTCTGG ATGTAAACGC TCAAATTCAA GGTTCTCCTG CAGGGAAACG TCTATGGGCC GAGTGTGTAG AAGTTGGTAT CGAGGCAAGA AAGTTAATGC TTAAGCACTG CACTTTAATC AAACCATTTA TTCCTCCTTA TGTGAAAGGT AAAAAATGGC AAGATCACGA TACTAAAGAA ATTGCAAATG ATCTTGAGTT TTTCAATTTC CATGCAAATG ATACATGGCA TAAATTTGAG GGTTATACAG ATAATCAATA TTTTGTTGAC CCTTGTAAAT TCATGCTCAC AACTCCGGGG ATTAACATTG AAACAGGGGA ATATGAAGAC TTTGGTATTC CAGCAACAAT CCTTGCTAAC TTCTTGCGAG AAAATGGAAT CATTCCTGAA AAATGTGACT TGAACTCCAT TTTATTCTTG CTTACACCGG CTGAAACATT GACAAAAATG CAAACTTTAG TTGCTCAAAT AGCTGCGTTT GAAAAACATA TCAAACAAAA TTCATTACTC AAAGATGTAC TGCCTACTGT GTACAAAAAT AATGAGGAAC GCTATCAGGG CTACACTATC AGACAATTAT GTCAAGAAAT GCACAATCTT TACGTCAGTA GAAATGTTAA ACAGCTACAA CGTGACTTGT TTAGAAAAAC AACTCTACCG GAATATGCTA TGAACCCACA AAAAGCGAAT ATCGAATTTG TTCGTAACAA AATTGAATTA GTTCCATTGA CAGATATTGT GGGGAGAATC GCCGCCGAAG GTGCATTACC TTACCCTCCA GGTGTTTTAT GTGTTGTTCC CGGTGAACGT TGGAGTACGA CAGTACAACA ATATTTCCTT GCACTGGAAG AAGGCATTAA TGTTCTTCCT GGATTCGCAC CGGAAATTCA GGGCGTATAT CTACAAAAAG ATCCTGATGG ACGTACACGT GCTTATGGAT ATGTATTAAC TGAAGCATAA
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Protein sequence | MLKLKIAHSP LVQKYFTSTR ELVLLNQTDF TDIGAIILTA EDVKYIQQIK TTEFNIPIFV VLNEGETLSD EYFDQVYHVQ DLNSYDINLY SRQIETAASL YEQKMLPPFF KMLSEYVEMG NLAFDCPGHQ GGQYFRKHPA GRYLYDFYGE NIFRSDICNA DVKLGDLLIH EGAPCDAQQH AAKVYNADKT YFVLNGTSAS NKVVCNALLA PGDLVLFDRN NHKSNHHGAL IQAGATPVYL ETARNPFGFI GGIDNHCFEE AYLKKLIAEV APEKLEEKRP FRLAIIQLGT YDGTIYNAKQ VVERIGHLCD YILFDSAWVG YEQFIPMMKD CSPLLLDLNE NDPGIIVTQS VHKQQAGFSQ TSQIHKKDKH IKGQARYCNH KRFNNAFMLH ASTSPFYPLF ATLDVNAQIQ GSPAGKRLWA ECVEVGIEAR KLMLKHCTLI KPFIPPYVKG KKWQDHDTKE IANDLEFFNF HANDTWHKFE GYTDNQYFVD PCKFMLTTPG INIETGEYED FGIPATILAN FLRENGIIPE KCDLNSILFL LTPAETLTKM QTLVAQIAAF EKHIKQNSLL KDVLPTVYKN NEERYQGYTI RQLCQEMHNL YVSRNVKQLQ RDLFRKTTLP EYAMNPQKAN IEFVRNKIEL VPLTDIVGRI AAEGALPYPP GVLCVVPGER WSTTVQQYFL ALEEGINVLP GFAPEIQGVY LQKDPDGRTR AYGYVLTEA
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