Gene HS_1313 details

Gene Information

• Locus tag: HS_1313
• Symbol: secD
• ID: 4240825
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Haemophilus somnus 129PT
• Kingdom: Bacteria
• Replicon accession: NC_008309
• Strand: -
• Start bp: 1503374
• End bp: 1505224
• Gene Length: 1851 bp
• Protein Length: 616 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 638104887
• Product: preprotein translocase subunit SecD
• Protein accession: YP_719525
• Protein GI: 113461456
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.198401
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTAAATC GTTACCCTTT ATGGAAGAAT CTAATGGTGA TCCTAGTGAT CGCCATTGGT 
GTTTTATATT CTCTTCCAAA TCTTTACGGT GAAGATCCAG CTGTACAAAT CTCTGGAACA 
CGAGGGCAAA CCGCTGATAT AAACGTGCTT ACTAATGTAC AAACATTATT AGAGCAAAAT 
AATTTACCTA TCAAATCAAT TATTTTGGAA AACGGCTCAA TTTTAGCTCG TTTCAACAAT 
ACAGATGATC AACTTTTAGC TAAAGATAAA ATTATTGAAC AACTTGGTAA TAATTATTCC 
GTTGCACTTA ACCTTGCACC CGCCACACCA AAATGGTTAA CCAATATTGG TGGTAGACCG 
ATGAAATGGG GGTTAGACCT ACGGGGAGGT GTTCGTTTCT TAATGGAAGT GGATATGCAC 
ACTGCATTGG ATAAACGCCA AGAACAATTA CAAGACAGCT TACGTACCGA ATTACGCAAA 
GAAAAATATC AATATACGTC TATTCGTAAT GGAGAAAATT TTACAACTCT CATTACCTTA 
GCTAAACCGG AACAACTTTC CGATGTACAA CGTTTCTTGC GTAAACAACA TCAAAATCTG 
AACGTTAATG CCATTTCTGA AAACACACTA AGTTTAGAAT TATCAGAGAA CGCTCTAAGA 
GAAATTCGTG ATCATGCTAT TGAACAAAAC TTAAGTATTT TACGTCGTCG TGTAGAAGAA 
TTGGGTGTTG CTGAACCTGT TATTCAGCGT CAAGGGGCTG AGCGTATTGT AGTGGAATTA 
CCCGGTGTAC AGGATACAGC TCGGGCAAAA GAAATTCTAG GTGCAACAGC AACGCTGGAA 
TTCCGTTTAG TAAATCAAAA TGCAAATTTA GATGTCGCTC TTAGAGGTAT GGTGCCTTCT 
GATTCGGAAG TGAAATATGA TCGCAATGGT AGTCCTATTG TGTTATATCG ACGAGCTGTA 
TTAGGCGGTG AGCATATTAC TAATGCAAGT TCAGGCATAG ATCAAAATAC CGGTTCTCCT 
CAGGTTTCGG TTACTTTAGA TTCTGAAGGT GGTGAAATTA TGTCACAAAC TACCAAACTT 
AATCTAAAGA AACCAATGGC AACTTTATAT GTAGAATATA AAGACAGTGG TAAAAAAGAC 
GAACATGGTA AAACTATTTT AGCTAAACAT GAAGAAGTTA TTAATGTTGC GACAATCCAA 
GGTCGTTTCG GTTCACAATT CCAAATTACC GGCATCAATA GCCCTGCTGA AGCACAAAAC 
CTAGCGGTAT TACTACGTTC AGGTGCTTTA ACTGCACCAA TTCAAATTAT TGAAGAGAGA 
ACGGTAGGCC CATCTTTGGG GGCTCAAAAC GTTGAACAAG GGCTGAAAGC AGGATTATGG 
GGATTAGCCA TTACGATTAT ATTTATTCTA TTTTACTATA AACTCTTCGG TTTATTTGCC 
AGCATAGCCC TTATTGCTAA TATGGTACTT CTTGTAGGCA TAATGTCTTT ATTACCTGGA 
GCGACTTTAA CAATGCCGGG TATCGCAGGG ATTGTTTTAT CTGTCGGTAT GTCTGTTGAT 
GCTAATGTAT TGATTTTTGA ACGAATAAAA GAAGAAATTA ATAATGGTCG CACAATTCAG 
CAAGCTATTA ATGAAGGTTA TAGCGGTGCA TTTACGAGTA TTTTTGATGC GAACTTAACC 
ACTATTCTAA CATCAGTCGT ATTATATGCT GTAGGTACTG GACCGGTTAA AGGGTTTGCT 
ATTACACTCT CTTTAGGTGT AGCGATTTCA ATGTTTACTG CCATTACAGG AACTCGTTTT 
CTTGTAAACT TAATCTATGG TGGAAAACGT GTTGAAAAAT TATCAATTTA A 

 

Protein sequence

MLNRYPLWKN LMVILVIAIG VLYSLPNLYG EDPAVQISGT RGQTADINVL TNVQTLLEQN 
NLPIKSIILE NGSILARFNN TDDQLLAKDK IIEQLGNNYS VALNLAPATP KWLTNIGGRP 
MKWGLDLRGG VRFLMEVDMH TALDKRQEQL QDSLRTELRK EKYQYTSIRN GENFTTLITL 
AKPEQLSDVQ RFLRKQHQNL NVNAISENTL SLELSENALR EIRDHAIEQN LSILRRRVEE 
LGVAEPVIQR QGAERIVVEL PGVQDTARAK EILGATATLE FRLVNQNANL DVALRGMVPS 
DSEVKYDRNG SPIVLYRRAV LGGEHITNAS SGIDQNTGSP QVSVTLDSEG GEIMSQTTKL 
NLKKPMATLY VEYKDSGKKD EHGKTILAKH EEVINVATIQ GRFGSQFQIT GINSPAEAQN 
LAVLLRSGAL TAPIQIIEER TVGPSLGAQN VEQGLKAGLW GLAITIIFIL FYYKLFGLFA 
SIALIANMVL LVGIMSLLPG ATLTMPGIAG IVLSVGMSVD ANVLIFERIK EEINNGRTIQ 
QAINEGYSGA FTSIFDANLT TILTSVVLYA VGTGPVKGFA ITLSLGVAIS MFTAITGTRF 
LVNLIYGGKR VEKLSI