Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HS_0664 |
Symbol | mnmC |
ID | 4240152 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Haemophilus somnus 129PT |
Kingdom | Bacteria |
Replicon accession | NC_008309 |
Strand | - |
Start bp | 711629 |
End bp | 713659 |
Gene Length | 2031 bp |
Protein Length | 676 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 638104216 |
Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
Protein accession | YP_718876 |
Protein GI | 113460809 |
COG category | [E] Amino acid transport and metabolism [S] Function unknown |
COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) [COG4121] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0436264 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTTTACAG TTACGCCCGC CAAAATTTAC CTGAATCAAG AAAAAACACC GGTATCAGAA CAATTTAATG ACGTTTATTT TTCCAACCAA GACGGTTTAG CAGAAAGCGA ATACGTATTT CAGCAAGGTA ATCATTTATG GGAACGCTGG ATTGTCTATC AAGAAAAACA TTTTGTCATT GCAGAAACAG GATTTGGTAC AGGTTTAAAT TTTCTTGCCG TAACAAGTTT ATTTCGCCAA TTTCGTCAAC AATATCCTGA TTTTCCGCTT AAACGTTTAT TTTTTATTTC CTTTGAGAAA TACCCTCTCC CCAAAGACCA ACTACAACAA ATTCATCGAC TTTACCCTCA ATTTTCCGCC TTATCACAAC AACTATGTGA TTATTGTTTA GATGCAATAC AGGGGTGTCA ACGTTTTCAT TTTGCTGAAA CAACATTGGA TTTATGGTTT GGCGATATTG CCGATAATTT ACCCCAACTG GGTGATTATA TGCAAAATCG CATTGATGCT TGGTTTTTAG ACGGTTTTTC ACCAAGTAAA AATCCACAGA TGTGGAATGA TAAACTGTAT CAACAGATAT TTTATTACAG CAAACCACAA GGTACATTTG CTACATTTAC CGCAGCAAGT GCGGTCAGAA AAGGATTAAT TTCTGCCGGA TTTGAAGTAC AAAAACGCAA AGGTTACGGC AAAAAGCGGG AATGTTTATG CGGCATCAAA AATTCTACCC AACAACAAAA TGCAAAATTT CCTTGGTACT TAAATCAGCC TGCCTCATTA CTTTCTGAAG ACATTGCCAT TATTGGAGGC GGAATCGCTT CACTTTTCAC CGCACTTTCA CTATTAAAAA GAGGTGCAAA AGTTACTCTT TATTGCGAAG ATGAACAACT TGCCCTCAAT GCCTCCGGTA ATAAACAAGG TGCATTTTAT CCTCAACTGA GCGATGACGA TGATCGCAAT ATTCGCTTTT ATGTTCATGC CTTTTTCTAT GCTTTACAAC AATTGCAGTG GGCAATTAAA CAAGGTATAG AATTTGAACA TGAATTTTGT GGTGTAGCAC TTTGTGCTTA CGATCACAAA AGTGCGGTTA AATTGGCAAA AATTTCTTCT TATCAATGGT CAAAAAGCTT GTATCAGAAT TTAAATAAAG AGCAGTTAAG TGAAAAAATA GGGCTTCCTT TAGATTGTGC AGGAGGTTTT ATTCCGCAGG GAGCTTGGCT TGCTCCACGT CAATTTGTGC AAAATGCTTT TTCTTACTTA CAACAACTTG GATTAGAGAT CAAAACCTCA CAAAAAATTA CCGCACTTGA CTACCGAAAT TTACAATGGG TTTTAACCAA TGAACAAAAT GAAACCTTTA ATCATCAAGT TGTTGTACTC GCCAATGGTT ATCAAATTAC AGATTTTGTG CAAACAGCTA AACTTCCTCT TTATCCCGTA CGAGGTCAAG TCAGCCAAAT TCCGACCAGT GCAAATTTAC TGAAACTTAA ATCCGTACTT TGTTACGATG GCTATTTAAC TCCGGCGGAT AAAATGAAAC AGAGTCATTG CCTTGGTGCA AGTCATATTC GCAATAACAA AGATCGCCAT TTTAGCCATC AAGAACAACG GGAAAATCAG CAAAAAATTC AACAAAATCT AGCTTCTACC GATACGGATA AAAATATGGA TTGGTTGCAG GATATTGATA TATCAGCCAA TATAGCTAGA ATAGGTGTTC GTTGTTCAGT GCGTGATCGT GTGCCGATTA TGGGGAATGT ACCTCATTTT GAGCAACAAT GTTTAGACTA CCGAAACATC TTCAATTTAC GTCGTCGTAA ACAGCCTATT CCTGATGCAG CACAATGGAA AAATTTATAT CTCATCGGTG CGTTAGGCTC AAGAGGGTTA ACTTCAGCCG CTTTATTAGG TGAAACCCTT GCCTCTCTGA TTTATGCAGA ACCACTCCCT TTGAGCGAAG ATATTCTACA TAATCTCAGC CCAAATCGCA GTTGGATACG TAAGTTATTA AAAGGAACTG AAATTAAATA A
|
Protein sequence | MFTVTPAKIY LNQEKTPVSE QFNDVYFSNQ DGLAESEYVF QQGNHLWERW IVYQEKHFVI AETGFGTGLN FLAVTSLFRQ FRQQYPDFPL KRLFFISFEK YPLPKDQLQQ IHRLYPQFSA LSQQLCDYCL DAIQGCQRFH FAETTLDLWF GDIADNLPQL GDYMQNRIDA WFLDGFSPSK NPQMWNDKLY QQIFYYSKPQ GTFATFTAAS AVRKGLISAG FEVQKRKGYG KKRECLCGIK NSTQQQNAKF PWYLNQPASL LSEDIAIIGG GIASLFTALS LLKRGAKVTL YCEDEQLALN ASGNKQGAFY PQLSDDDDRN IRFYVHAFFY ALQQLQWAIK QGIEFEHEFC GVALCAYDHK SAVKLAKISS YQWSKSLYQN LNKEQLSEKI GLPLDCAGGF IPQGAWLAPR QFVQNAFSYL QQLGLEIKTS QKITALDYRN LQWVLTNEQN ETFNHQVVVL ANGYQITDFV QTAKLPLYPV RGQVSQIPTS ANLLKLKSVL CYDGYLTPAD KMKQSHCLGA SHIRNNKDRH FSHQEQRENQ QKIQQNLAST DTDKNMDWLQ DIDISANIAR IGVRCSVRDR VPIMGNVPHF EQQCLDYRNI FNLRRRKQPI PDAAQWKNLY LIGALGSRGL TSAALLGETL ASLIYAEPLP LSEDILHNLS PNRSWIRKLL KGTEIK
|
| |