Gene HS_0661 details

Gene Information

• Locus tag: HS_0661
• Symbol: rnb
• ID: 4240149
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Haemophilus somnus 129PT
• Kingdom: Bacteria
• Replicon accession: NC_008309
• Strand: -
• Start bp: 707927
• End bp: 709906
• Gene Length: 1980 bp
• Protein Length: 659 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 638104213
• Product: exoribonuclease II
• Protein accession: YP_718873
• Protein GI: 113460806
• COG category: [K] Transcription
• COG ID: [COG4776] Exoribonuclease II
• TIGRFAM ID: [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases; [TIGR02062] exoribonuclease II

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTCAAA ATAATCCCCT ACTTTCCCAA CTCAAACAAC AAATTCGTGA TAGTAAACCG 
CATGTAGAAG GTATTGTAAG AGGTTCTGAC AAAGCCTTCG GTTTCCTTGA GTGTGATAAA 
AAAAGTTATT TTATTCCGCC AATGGCAATG AAAAAAGTTA TGCATGGCGA CAAAATTAAA 
GCAGTGATTG AAACGATTGG CGATAAAGAA CAAGCTGAAC CGGAAGAACT CATTGACCCC 
ATGCTAACTC GCTTTATTGC CAAAGTGCGG TTCAATAAAG ACAAGAAATT ACAACTTGTA 
GTCGATCACC CCCAAATTAA TCAACCAATT GGAGCGACAC AAACAAAAGC CGTTAAAGAA 
GAATTACAAG AGGGAGATTG GGTTGTGGCA CAGCTAAAAA ACCATCCTTT ACGTGATGAT 
CGTTTTTTCT TTGCACACAT TTCTGAATTT ATTTGTCACG CTGATGATGA ACTTGCACCT 
TGGTGGGTAA CTTTGGCACA TCATGAACAA TCTCGTTATC CTGTACAGGG ACAAGAAAGT 
TACCACATGT TGGATCAACA AGATCGTGAA GATCTCACCG CACTTCACTT CATCACTATT 
GATAGTGAAA CAACAAAAGA TATAGATGAT GCTTTATATA TTGAGCCAAT CAACGAAAAT 
GAAGCTCAAG TCGGCTGGAA ATTAGTAGTT GCGATTGCCG ATCCAACTGC TTATATTGAT 
GTTAATTCAC AAATTGAACA AGATGCCAGA CAACGTTGTT TCACTAATTA CTTGCCGGGA 
TTTAATATTC CAATGTTGCC TCGAGAGTTA TCCGACGATC TTTGCTCTCT TTCCGAAAAT 
GCTCAACGTG CCGCATTGGT TTGTTATATC ACAACAGATT TACAAGGTGA AATTACCGCT 
ACACCATACT TTGTCTCTGC TTATGTAATG TCGAAAGCTA AACTAGCTTA TGATAAAGTG 
TCTGATTATT TAGAACAAAA AACAGGCTGT TGGCAACCAC AAGATCCTGT TACTCAACAA 
CAAATTGCAT GGTTACATGA GTTTACCTTA GCTAGATCAC AATGGCGTAA AACTCATGCT 
TTACTGTTTA AAGAAAAACC GGACTACTCT TTTGTACTGG CAGAAAATGG TAAAGTACAA 
GAGATCAAAA CAGAATATCG TCGCATTGCA AACCAAATTG TTGAAGAAGC AATGATTATT 
GCGAATATTT GTGCGGCACA ATATCTGAAT GAAAAAATTG GTTTTGGGAT TTTTAATACT 
CATAGTGGTT TCGATAAAAA ATTCTTGGAA AATGCACATC ATTTCCTGCT GTCAAATTTA 
ACCAGCGAAC AAAATCAAGC AGAATTAAAA CAACGCTATT CTGTAGAAAA TTTAGCAACC 
TTAAGTGGAT ACTGCAATAT GCGTCATGAT ATTGGAGCAA GCGAAAATAA TTATCTTGAA 
TTGCGTTTAC GTCGTTTCTT AACCTCAGCA GAATTTAAAA CGGAATTAGC ACCGCACTTT 
GGCTTAGGTT TGCAAGGTTA CGCCACATGG ACATCTCCAA TTCGTAAATA TTCGGATATA 
GTTAATCATC GCCTAATTAA AGCAAGTCTC ACAACACAAC AATATGAACG CCCTCAAGAT 
AGTATCTTAC AACGTTTACA AGAGGCTCGT CGTCAAAACC GTTTAGTTGA GCGAGATATT 
GCAGATTGGT TATATTGTCG CTATTTAGCA GATAAAGTAG AACAAAAACA AATATTTCAA 
GCAGAAATAC AAGATGTCAT GCGTGGCGGA TTACGTGTAC TTCTATTGGA AAATGGTGCT 
TCCGTCTTTA TTCCGGCATC AACCTTACAC AGCAATAGAG AAGAACTTCA GGTCAATGCC 
GAGGAAATTG CACTTTATAT TAAAGGAGAA AAAACATACA AAATTGGCGA TATAATTCAT 
GTTCAACTTG TGGACGTTAA AGAAGAAACG AGAAGCATTA TTGGAAATAT TGCTAACTAA 

 

Protein sequence

MFQNNPLLSQ LKQQIRDSKP HVEGIVRGSD KAFGFLECDK KSYFIPPMAM KKVMHGDKIK 
AVIETIGDKE QAEPEELIDP MLTRFIAKVR FNKDKKLQLV VDHPQINQPI GATQTKAVKE 
ELQEGDWVVA QLKNHPLRDD RFFFAHISEF ICHADDELAP WWVTLAHHEQ SRYPVQGQES 
YHMLDQQDRE DLTALHFITI DSETTKDIDD ALYIEPINEN EAQVGWKLVV AIADPTAYID 
VNSQIEQDAR QRCFTNYLPG FNIPMLPREL SDDLCSLSEN AQRAALVCYI TTDLQGEITA 
TPYFVSAYVM SKAKLAYDKV SDYLEQKTGC WQPQDPVTQQ QIAWLHEFTL ARSQWRKTHA 
LLFKEKPDYS FVLAENGKVQ EIKTEYRRIA NQIVEEAMII ANICAAQYLN EKIGFGIFNT 
HSGFDKKFLE NAHHFLLSNL TSEQNQAELK QRYSVENLAT LSGYCNMRHD IGASENNYLE 
LRLRRFLTSA EFKTELAPHF GLGLQGYATW TSPIRKYSDI VNHRLIKASL TTQQYERPQD 
SILQRLQEAR RQNRLVERDI ADWLYCRYLA DKVEQKQIFQ AEIQDVMRGG LRVLLLENGA 
SVFIPASTLH SNREELQVNA EEIALYIKGE KTYKIGDIIH VQLVDVKEET RSIIGNIAN