Gene HS_0591 details

Gene Information

• Locus tag: HS_0591
• Symbol: sapD
• ID: 4240075
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Haemophilus somnus 129PT
• Kingdom: Bacteria
• Replicon accession: NC_008309
• Strand: -
• Start bp: 630049
• End bp: 631095
• Gene Length: 1047 bp
• Protein Length: 348 aa
• Translation table: 11
• GC content: 35%
• IMG OID: 638104141
• Product: peptide ABC transporter, ATP-binding protein
• Protein accession: YP_718803
• Protein GI: 113460736
• COG category: [V] Defense mechanisms
• COG ID: [COG4170] ABC-type antimicrobial peptide transport system, ATPase component
• TIGRFAM ID: [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.0604059
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTTTAC TTGATATTCG TAATCTTTGT ATTGAAATAG AAACACCAAA AGGACGAGTC 
AAAATTATTG ATAATGTTAA TTTAACCTTA AATGAAGGTG AAATCTGTGG TTTAGTCGGT 
GAATCAGGTT CCGGAAAAAG CCTGATTGCT AAAGTTATTT GTAATGCAAT TAAGGATTCT 
TGGATTATTA CAGCCGATCG TTTTCGTTTT GACGATGTAG AACTACTAAA ACTAAATCCC 
AAAAAAAGAC GTAAACTGGT AGGTAAAGAA ATCTCCATGA TTTACCAAGA GCCTTTAGCA 
TCTTTAGATC CTAGCCGAAA AATTGGACAA CAACTTATCC AGAGCATTCC CTCTTGGACA 
TTTAAAGGGC GATGGTGGCA ATGGTTCGGT TGGAAAAAAC GTCGTGCTAT TGAATTATTA 
CATCGTGTAG GTGTGAAAGA TCATAAAGAT ATTATGCAAA GTTACCCACA TGAAGTAACT 
GAAGGTGAAG GACAAAAAAT TATGATTGCC CTTGCAATTG CAAACCAACC TCGATTATTA 
ATCGCTGATG AACCTACAAA TTCTCTTGAG TCAATGACAA AAGTACAAAT ATTTCGTTTA 
CTTGCCAGTA TGAATCAAAA TCAGGGAACA AGTATTCTGC TGGTAAGTAA TGATATAAAT 
AGTATTAGTG CATGGTGTGA TAGTTTTTCA GTTCTTTATT GCGGACAAAA CGCTGAATCA 
GGATCTAAAG AAAACATTTT AGAAAATCCT CACCATCCCT ATACAAGAGC ATTATTACAT 
TCTATTCCTG ATTTTAAACA GCCCTTAGTA CATAAAAGTC GTTTGAGTAC GCTAAAAGGT 
GCTGTTCCAT TATTAGAAGG AATGCCTATC GGTTGCCGTT TAGGTCCACG TTGTCCTTTT 
GCACAAAAAG AATGTATTCG AAAACCAACC GCACAACGGA TTAAACAACA TGAATTTTTC 
TGCCATTTCC CTATTAATTT AAAAGAAAGT CAACGTAGAG AAAAAGAAAT GGAAACTGGC 
CCATTAGTCG TAAACACAAC AAAATAA 

 

Protein sequence

MALLDIRNLC IEIETPKGRV KIIDNVNLTL NEGEICGLVG ESGSGKSLIA KVICNAIKDS 
WIITADRFRF DDVELLKLNP KKRRKLVGKE ISMIYQEPLA SLDPSRKIGQ QLIQSIPSWT 
FKGRWWQWFG WKKRRAIELL HRVGVKDHKD IMQSYPHEVT EGEGQKIMIA LAIANQPRLL 
IADEPTNSLE SMTKVQIFRL LASMNQNQGT SILLVSNDIN SISAWCDSFS VLYCGQNAES 
GSKENILENP HHPYTRALLH SIPDFKQPLV HKSRLSTLKG AVPLLEGMPI GCRLGPRCPF 
AQKECIRKPT AQRIKQHEFF CHFPINLKES QRREKEMETG PLVVNTTK