| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HS_0295 |
|---|
| Symbol | trmD |
|---|
| ID | 4239497 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haemophilus somnus 129PT |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008309 |
|---|
| Strand | + |
|---|
| Start bp | 294228 |
|---|
| End bp | 294965 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638103835 |
|---|
| Product | tRNA (guanine-N(1)-)-methyltransferase |
|---|
| Protein accession | YP_718503 |
|---|
| Protein GI | 113460441 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000141791 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGGATCG GGATTATTAG TCTATTTCCT GAAATGTTCA AAGCTATTAC GGAATACGGA
GTAACAGGAC GAGCAGTTAG GCAAAACCTG CTGGAGATAC AATATTGGAA TCCGAGAGAT
TTCACCTTTG ATAAACATAA AACGGTAGAT GATCGCCCTT ATGGTGGAGG ACCGGGAATG
TTAATGATGG TGCAACCTTT GCGTGATGCC ATTCATTGTG CAAAGTCTGT GGCAGGTGAT
GGTGTGAAAG TGATTTATCT TTCGCCTCAA GGACGTAAAC TGGATCAAAA TGGTGTTCAA
GAGCTTGCCA GAAATCAAAA AATGATTTTT GTTTGCGGGC GTTATGAAGG CATTGATGAA
CGATTGATTG AAACTGAAAT TGATGAAGAA TGGTCAATCG GAGATTATGT TCTTACCGGT
GGGGAATTGC CGGCGATGAC GTTGATTGAT GCAGTCGCAA GATTTGTTCC CTGTGTTTTG
GGTAAACAAG CCTCTGCACA AGAAGATTCT TTTGCAGAAG GGCTATTAGA TTGCCCACAT
TACACAAGAC CGGAACAATT AAACGGTTTA ACTGTACCTC CTGTATTGAT GTCTGGTAAT
CATGAGGAAA TTCGTAAGTG GAGATTAAAG CAGTCTTTGC AACGAACATG GTTAAGACGA
CCTGAGCTAT TGGAAAGCCT AGCTCTGACT GACGAACAAA GTAAGCTGTT ATCGCAGATT
AAACAAGAAA ACAGTTAA
|
|---|
| Protein sequence | MWIGIISLFP EMFKAITEYG VTGRAVRQNL LEIQYWNPRD FTFDKHKTVD DRPYGGGPGM
LMMVQPLRDA IHCAKSVAGD GVKVIYLSPQ GRKLDQNGVQ ELARNQKMIF VCGRYEGIDE
RLIETEIDEE WSIGDYVLTG GELPAMTLID AVARFVPCVL GKQASAQEDS FAEGLLDCPH
YTRPEQLNGL TVPPVLMSGN HEEIRKWRLK QSLQRTWLRR PELLESLALT DEQSKLLSQI
KQENS
|
|---|
| |