Gene HS_0294 details

Gene Information

• Locus tag: HS_0294
• Symbol: rimM
• ID: 4239496
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Haemophilus somnus 129PT
• Kingdom: Bacteria
• Replicon accession: NC_008309
• Strand: +
• Start bp: 293647
• End bp: 294174
• Gene Length: 528 bp
• Protein Length: 175 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 638103834
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_718502
• Protein GI: 113460440
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.0000244736
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAACAAC AAAGAATAGA AGTCGTTGGA AAATTAGGTT CAACATACGG AATTCGTGGT 
TGGTTGCGTC TTTATTCATC AACAGAACAA GCTGAAAGTA TCTTTGATTA CCAACCTTGG 
TTTTTAAAAA TCAAGGGGCA ATGGCAACCA ATTGAATTGG AAAGCTGGAA ATTTCATAAT 
CACGAGTTAA TTGTTAAATT AAAAGGCATT AATGAGCGTG AGGTCGCACA AACTTTGGCA 
AATGTTGAAA TCGGAGTAAA TTTATCCGTT TTTCCTCTAT TAGATGAGGG GGATTTTTAT 
TGGCATGATT TAATCGGTTG TCAAGTTGTG AATCTACAAG GTTATGCAAT GGGTGTTGTG 
TCTGAAATGA TGGAAACCGG TGCCAATGAT GTGTTGGTTG TACGTGCAAG TACAAAAGAT 
GCTTTTGGTA AAAAAGAGCG GTTGATTCCG TTCTTATATG AACAAGTAGT TAAAAGAGTG 
GATCTCAGTT CTAAAACTAT TGAAGTTGAC TGGGATGCTG GTTTCTAA 

 

Protein sequence

MEQQRIEVVG KLGSTYGIRG WLRLYSSTEQ AESIFDYQPW FLKIKGQWQP IELESWKFHN 
HELIVKLKGI NEREVAQTLA NVEIGVNLSV FPLLDEGDFY WHDLIGCQVV NLQGYAMGVV 
SEMMETGAND VLVVRASTKD AFGKKERLIP FLYEQVVKRV DLSSKTIEVD WDAGF