| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1347 |
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| Symbol | |
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| ID | 8708871 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 1611486 |
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| End bp | 1614476 |
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| Gene Length | 2991 bp |
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| Protein Length | 996 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 646483432 |
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| Product | putative calcium-translocating P-type ATPase, PMCA-type |
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| Protein accession | YP_003374529 |
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| Protein GI | 283783775 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0474] Cation transport ATPase |
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| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01517] plasma-membrane calcium-translocating P-type ATPase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0150018 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTGATC ACGCTCTTGA TCAATCCAAT AAAACAGCTG ACTCTTCAGC TAATAGCAAA
GATCCATCAT TGTGCGATGT TCAGCAAGTA GCTAAATCAC TTAACGTAGA TATTACATGC
GGTTTAAGCT CTGAGGAAGC CGCAAAAAGA CTTGCTCAAT TCGGCCCAAA TGCACTTGCT
GCTGCTCCTA AAATTCCAGC ATGGAAACGG TTCCTTGATC AATTTAAAGA TCCGCTCGTT
TACTTGCTTA TTGCAGCAAC TATTATTTCT GCAATTGCGT GGTTTGTTGA GCGCGCACAA
CATAAAGGAA ACAGCGGTGG AGAGATTCTG CCGTTTGATT CAATCGTAAT TATCATTATT
TTGATTGCAA ACGCAGTGCT TGGCTACATT CAAGAGTCGC GAGCAGAAGA AGCAGTCGAA
GCTTTAGCTA GAATGAGTGC TCCGCAAACT TCAGTTTTGC GCGATGGTAG CGTGGTGCGC
ATTAATACTG CAGAAGTTGT GCCAGGCGAT ATCTTAGTGC TTGGCGAAGG AGATGCCGTG
TCTGCAGACG GTCGACTTAT AGCAGCGGCT TCATTACGCG TAGCTGAGGC AAGTCTTACA
GGCGAATCTG TTGCAGTAAG CAAACGTCCG AATATGCTTT CGTCTGCAAA AGCTTTAGGC
GATCGCACAA ATATGGTTTT CAACGGAACT GCTGTTACGC AAGGAACCGG TCGCGCTGTA
GTCACCTCTA CAGGTATGCG CACACAAGTT GGCAAAATCG CGGATATGCT TTCAAAATCA
GATGACGAAG CAACACCTCT CGAGAAAGAA ATGGTACACG TTTCTAAAGT TCTTGGAATT
GCGGTGTGCA TTATTGCAGC TGTTGTTCTT GCTTCCATGT GGCTGATTGA AGGCTTCCAC
AGTATTCAAG ATATTATTGA TTCTCTGCTG CTTTCTGTTT CCCTAGCTGT TGCTGCTGTT
CCAGAAGGTT TAGCTGCGAT TTTGACAGTA GTTCTTGCGC TTGGCGTGCA ACGAATGGTG
AAGCATCATG CTGTTGTAAA AAAGCTTTCA TCCGTGGAAA CACTTGGTTC TGCTTCTGTT
ATTTGCTCCG ATAAAACAGG CACCTTAACT CGAAACGAGA TGACTGTTGA ACGCGTAGTA
ACACCTAGCG GCGAAGTTCA GCTTACAGGA AGCGGTTACA AGCCTGAAGG ACGCATGATA
TTAATTGGTT CTGCGGACGC AGATTTAGCA GTACCACAAA ATCTTGCTAC AGAAGTATTA
GGCGCGTTAG GCTCCGGATG TTTGGCTAAC GACGGCGATT TGCATTATGA CGAAACTACT
AAAAGTTGGC AGCCCGTGGG AGACCCTACA GAAGTTTCGC TAATAGTAGC AGCTCGTAAA
ACAAAAGCGG ACAAACGTTA CGCTCATTTG ACTCGAGTTG CGGAAGTACC TTTTACTTCT
GAACGCAAAC GTATGTCTGT TGTTGTTAAA GATGGTTCGG ATTCTGGAAA TCTGATTGTT
TGCGCTAAGG GCGCTCCGGA CGTGCTGCTT TCTTATTGCA CGCGTATTGC AGTAGCTGGT
GCCGTGCGTC CGCTTACTGA CGGCGATCGC GAAGATATTT TAGCAACTGT TGAACGTCTT
TCTGGAGAAG CCTACCGCAC GCTTGGAATA GCTTATAGGC CGCTTGGAGT CGATAGTCTT
TCAAAAGTTG ATGGCATGGT TTCTAACGCT GCAGGTCAAA TCGCGGACGT TGCGGAACAA
AGTGACGTAC TAGAATCTGA TTTGATTTGG AATGGTATGG TTGGAATTAT TGATCCTCCG
CGAATTGAAG TTCGAGATAG TGTAGCTCAA GCTCATCGCG CTGGAATCCG TACTGTTATG
ATTACAGGCG ACCATCCTCT TACGGCTACG CGTATTGCTC GAGATCTTGG AATCATTGGA
AAAGATGAGC ATGCACTTAC AGGCGACGAA CTTGACGAAT TGCTTTCACG CAACGACGAT
AATATTGCTT TTGATGAAGC TATCAGTAAA ACTAGCGTGT ACGCGCGAGT AGCCCCTGAG
CACAAGTTAG CTATCGTTTC TTCGCTTCAA CGTCAAGGAA ACATTGTTGC TATGACTGGT
GACGGCGTAA ACGATGCTCC AGCCGTAAAG TCTGCCGATA TTGGCGTTGC TATGGGCATT
ACTGGTACAG AAGTAACTAA AGAGTCTGCC AAGATGATTT TGGCTGACGA TAACTTCTCT
ACAATTGTTG CAGCAGTGCG CGAAGGTCGC GGAATTTTCG ACAATATTCG TAAATTCTTG
CGATACTTGC TCAGTTCTAA CGTTGGCGAA GTTTGTACTG TTTTCGGCGG CGTTGTTTTC
GCTGGCGCAC TGGGAATTAC ACAGCCAAAC TCTGTTGGTG TAACTTTGCC TTTGCTTGCA
ACTCAGCTTT TGTGGATTAA CTTGCTTACG GATGCAGCTC CTGCACTCGC GATGGGCGTT
GATCCGCAAA CTGACGACGT AATGGATCGA AAGCCCCGAA AGCTTACCGA TAGCGTTATT
GACCGACGAA TGTGGGGAGA TATTGTATTT ATCGGCATAA TCATGGCTGC TATTACGTTA
ATCGGCATGG ATATGCATTT GGCAGGCGGA TTCTTTACAG ACCGTTCTGT TGGAATTATG
GATCACGCTG CTCAGCTTAC TCACGCTCGC ACAATGGGCT TTACAATTCT TGTGTTTGCG
CAAATGCTGA ATGCGTTAGC ATCTCGTTCA GACTCACAAA GCGTATTTGT AGGCTTATTT
GCAAATCGTT GGCTTTGGGG TGCTATAGCA GTTTCTATTG TGCTTCAGTT GGCTGTAATT
TACATACCGT TCTTGAATGA GCCATTTGGC ACTGTTCCTT TGAGTGTAAC GGAATGGTTC
GAGTGCCTTG GTCTTTCAAT GGTCGTGTTA ATTGCTTCCG AATTGCGTAA ATGCGTGCTT
CGTTTCATTG CAAAACGTAA AGCAGCGAAC GCCTTAACTA TTGCCGCTTA A
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| Protein sequence | MVDHALDQSN KTADSSANSK DPSLCDVQQV AKSLNVDITC GLSSEEAAKR LAQFGPNALA
AAPKIPAWKR FLDQFKDPLV YLLIAATIIS AIAWFVERAQ HKGNSGGEIL PFDSIVIIII
LIANAVLGYI QESRAEEAVE ALARMSAPQT SVLRDGSVVR INTAEVVPGD ILVLGEGDAV
SADGRLIAAA SLRVAEASLT GESVAVSKRP NMLSSAKALG DRTNMVFNGT AVTQGTGRAV
VTSTGMRTQV GKIADMLSKS DDEATPLEKE MVHVSKVLGI AVCIIAAVVL ASMWLIEGFH
SIQDIIDSLL LSVSLAVAAV PEGLAAILTV VLALGVQRMV KHHAVVKKLS SVETLGSASV
ICSDKTGTLT RNEMTVERVV TPSGEVQLTG SGYKPEGRMI LIGSADADLA VPQNLATEVL
GALGSGCLAN DGDLHYDETT KSWQPVGDPT EVSLIVAARK TKADKRYAHL TRVAEVPFTS
ERKRMSVVVK DGSDSGNLIV CAKGAPDVLL SYCTRIAVAG AVRPLTDGDR EDILATVERL
SGEAYRTLGI AYRPLGVDSL SKVDGMVSNA AGQIADVAEQ SDVLESDLIW NGMVGIIDPP
RIEVRDSVAQ AHRAGIRTVM ITGDHPLTAT RIARDLGIIG KDEHALTGDE LDELLSRNDD
NIAFDEAISK TSVYARVAPE HKLAIVSSLQ RQGNIVAMTG DGVNDAPAVK SADIGVAMGI
TGTEVTKESA KMILADDNFS TIVAAVREGR GIFDNIRKFL RYLLSSNVGE VCTVFGGVVF
AGALGITQPN SVGVTLPLLA TQLLWINLLT DAAPALAMGV DPQTDDVMDR KPRKLTDSVI
DRRMWGDIVF IGIIMAAITL IGMDMHLAGG FFTDRSVGIM DHAAQLTHAR TMGFTILVFA
QMLNALASRS DSQSVFVGLF ANRWLWGAIA VSIVLQLAVI YIPFLNEPFG TVPLSVTEWF
ECLGLSMVVL IASELRKCVL RFIAKRKAAN ALTIAA
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