| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1332 |
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| Symbol | |
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| ID | 8709333 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1592662 |
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| End bp | 1594581 |
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| Gene Length | 1920 bp |
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| Protein Length | 639 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 646483417 |
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| Product | alpha amylase, catalytic domain protein |
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| Protein accession | YP_003374515 |
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| Protein GI | 283783761 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.86601 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTACTT TTGACAGAGC AAACTTGCCA GAATCCGTGC GCACAAACGG CGCTACTCCA
AACCCTTGGT GGGCGAATGC AGTTGTGTAT CAGATTTATC CACGAAGCTT CCAGGATACG
AACGGTGACG GCATTGGTGA TTTGAAGGGA ATTACTTCGC GCCTTGATTA TTTGGCTGAT
TTAGGCGTTG ACGTGCTCTG GCTCAGCCCT GTTTACAAGT CCCCACAAGA CGATAACGGC
TACGATATTT CCGATTATCA AGATATTGAT CCGCTTTTCG GAACTTTGGA AGATATGGAC
GAGCTGCTGG CTGGAGCTCA CGAGCGCGGT CTTAAAGTCG TGATGGATTT AGTAGTAAAT
CACACTTCTG ACGAGCACGC TTGGTTCCAG GCTTCAAGAG ATGCTTTTAG TGATTACGCT
GATTGGTATT GGTGGAGGCC TGCGCGTGAA GGTTGTGTGC CTGGTGAGCC GGGTGCGGAG
CCGAATAAGT GGGGTTCGTA TTTCGGCGGT TCCGCGTGGA CTTACGATCC GAAGCGCGGA
GAATACTTCC TTCACCAGTA TTCGCCAAAG CAGCCAGATT TGAATTGGGA AAATCCCGCG
GTTCGCGCTG CCGTGTACAA GATGATGAAT TGGTGGATGG ATCGCGGAAT TGATGGCTTC
CGCATGGATG TGATTACGCA AATTTCCAAG CATGTTGATT CTGAAGGTCG TTTGCCGGGT
GAAGATGGCT GCCAAATTGA AGATTTGCCA GCTGGTGCTG ACGGCTATTC TTCGCCATTC
CCGTTCTGCT CGGACGGTCC TCGTTTAGAC GAATTCTTGC GTGAGATGCG TGCAGAAGTT
TTCGACGGTC GCGAAGGTTA TCTTACTGTC GGCGAGGCTC CGGGAATTTC TCCGCACCGT
AATACTTATA TTACTGACCC TGCCCACAGC GAACTTGACA TGTTATTCCT GTTCAATCAT
GTGGATATCG ATTGCGAAAA CGGTACTAAG TGGAATCCTG TGCCGCTAAA GCTTACGGCA
TTAAAGAGCG TGATGGCAGA GCAGCAACAA GCGGTAGCGG ATGCTGGTTG GGCGAGCCTG
TTCTTTAATA ATCACGATCA GCCGCGTGCG CTTTCTCGCT GGGGTAGTGA GGCTAGCGAG
GAGATGCGCG TGCGCTCTGC TAAGGCGATT GCCATGCTTC TTCACATGCA CCGCGGCACG
CCTTACGTGT ACCAAGGCGA GGAAATTGGT ATGACTAACG CGCACTTTAC GCGTCTCGAG
CAGTATCGCG ATTTGGAAGC GTTGAATATG TTTAAGCAGC GCGTAGAAGA AGCGCATATT
CAGTCTGCTG AGTCGATGAT GGATGCGCTC GCAAAGCGCG GCCGCGACAA TTCTCGAACT
CCAATGCAGT GGAATGCTTC TAAATACGCG GGATTCATGC CTTTTAATGT TCAGTCGGTA
AATAACGCAG AGCCGTGGAT TAGTGTGAAT CCTAATTATG TGGATATTAA CGCAGCGGAG
CAGATGGAAG ATTCAGATTC CGTTTACGCT TTCTATAAGT ATTTGATTGC GCTTCGTCAT
TCGGAACCGA TTGTTTCTGC TGGTTCTTGG GATTTGGTTG ATGCAGATGA CGAGTGCGTG
TATGCTTTCG TGCGCGAGCT TAAATCTGGT TGCGAAAAGC AGGAAGATTC TGCAGAGACT
GCTGCGGAAT CTGCTGCAAA TTCCGCGGAA TCTACAGAAC GCATGCTCGT AATGGTTAAT
ATGACTGACT CAACTGTGCC TATCCCTACG CAGAGCGCGC AATTATTGCA AAATTGCGCC
TCTAACGCTT TTGTAGGGCG TGACGTAATG GTTACGACCT ACGACGTGAA TCACGCGCTT
ACATCGCTTA AAAACGGTAC GCTTGCGCCT TGGGAAGGTA TAGCTGTTAC TTTGCAATAG
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| Protein sequence | MTTFDRANLP ESVRTNGATP NPWWANAVVY QIYPRSFQDT NGDGIGDLKG ITSRLDYLAD
LGVDVLWLSP VYKSPQDDNG YDISDYQDID PLFGTLEDMD ELLAGAHERG LKVVMDLVVN
HTSDEHAWFQ ASRDAFSDYA DWYWWRPARE GCVPGEPGAE PNKWGSYFGG SAWTYDPKRG
EYFLHQYSPK QPDLNWENPA VRAAVYKMMN WWMDRGIDGF RMDVITQISK HVDSEGRLPG
EDGCQIEDLP AGADGYSSPF PFCSDGPRLD EFLREMRAEV FDGREGYLTV GEAPGISPHR
NTYITDPAHS ELDMLFLFNH VDIDCENGTK WNPVPLKLTA LKSVMAEQQQ AVADAGWASL
FFNNHDQPRA LSRWGSEASE EMRVRSAKAI AMLLHMHRGT PYVYQGEEIG MTNAHFTRLE
QYRDLEALNM FKQRVEEAHI QSAESMMDAL AKRGRDNSRT PMQWNASKYA GFMPFNVQSV
NNAEPWISVN PNYVDINAAE QMEDSDSVYA FYKYLIALRH SEPIVSAGSW DLVDADDECV
YAFVRELKSG CEKQEDSAET AAESAANSAE STERMLVMVN MTDSTVPIPT QSAQLLQNCA
SNAFVGRDVM VTTYDVNHAL TSLKNGTLAP WEGIAVTLQ
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