| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1297 |
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| Symbol | |
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| ID | 8709975 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 1550127 |
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| End bp | 1551050 |
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| Gene Length | 924 bp |
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| Protein Length | 307 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646483384 |
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| Product | ABC transporter, permease protein |
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| Protein accession | YP_003374485 |
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| Protein GI | 283783731 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3833] ABC-type maltose transport systems, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGTGATA AAACTACAAC TAAGAACGAA GAAGCTGTTG TAAAGAGCAC TCGTAGTGTT
TCTTTCCTTA AAGATCAACA TGTCAGAAGA GTAATTGGAG ATACTTTCTC ACATTTGTTC
TTGCTGGTGT TGTCAGTTAT TTGGCTGATT CCAATCTTGT GGGTTTTGTT AGAAAGCTTC
AACAAGAACA CTGGTTCCTA TCAGAAAACC TTCTTCCCAA CTGAATACTC ACTAAATAAC
TATATAAAGT TATTTACCGA TACCGATGAC ATTAATTTCC CACGAATGTT CCTCAACACT
TTGATCGTGT CAATTTTCGT GTGCATTATT TCTTTGGTGT TTGTGTTAGC AGTGTCCTTC
TGCATGTCTC GTCTCCGTTT CAAAGGGCGC AAGACATTCA TGAATCTTGC TCTGATTCTT
GGTATGTTCC CAGGTATCAT GGCTGTTATT GCTATCTACT TCATTTTGAA GGCTCTTGGT
TTAACAAAAG GTTCGATTGT ATTAATCGCA CTTATTATCG TTTATTCTGC AGGTAGCGGT
GCTGGCTTCT ACATTATGAA GGGCTACATG GATACTATTC CAAAGTCTTT GGATGAAGCT
GCATACTTGG ATGGATGCAC AAAGTGGCAA GTATTCTGGA AGATTATTGT TCCAATCTGC
AAGCCTATGA TTGTATTCCA AGCAATTACT GGATTCTTGG GACCATGGCT AGACTTCGTT
ATGGTGAAGA CAGTAGTGAG AGACAATAAG GAAAACTACA CAGTTGCTTA CGGATTAATG
GAGATGCTTA CCAAAAAGTA TCTACCTGAT TGGTACGCTG CATTCGCGGC AGGTGCTGTG
TGCATTTCCA TACCAATCGT AATCCTGTTC ATTATTATGC AGCGCTTCTA CGAAGAGTCC
ATGTCTGGCT CCGTTAAAGG CTGA
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| Protein sequence | MSDKTTTKNE EAVVKSTRSV SFLKDQHVRR VIGDTFSHLF LLVLSVIWLI PILWVLLESF
NKNTGSYQKT FFPTEYSLNN YIKLFTDTDD INFPRMFLNT LIVSIFVCII SLVFVLAVSF
CMSRLRFKGR KTFMNLALIL GMFPGIMAVI AIYFILKALG LTKGSIVLIA LIIVYSAGSG
AGFYIMKGYM DTIPKSLDEA AYLDGCTKWQ VFWKIIVPIC KPMIVFQAIT GFLGPWLDFV
MVKTVVRDNK ENYTVAYGLM EMLTKKYLPD WYAAFAAGAV CISIPIVILF IIMQRFYEES
MSGSVKG
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