| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1252 |
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| Symbol | |
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| ID | 8709040 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1496049 |
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| End bp | 1497938 |
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| Gene Length | 1890 bp |
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| Protein Length | 629 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646483340 |
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| Product | putative phosphonate C-P lyase system protein PhnK |
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| Protein accession | YP_003374442 |
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| Protein GI | 283783688 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
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| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.000167547 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTGATA TTGCAAATAA CGCTATTAAG GAAGAAACCA CGATGGAAGA TCAAAACAAC
GAACCGTTGC TTTCAGTACG CGACTTGCAA GTTAGCTTCG CTTCTGAAGC TGGTACTGTG
CATGCTGTGC GCGGAATGAA TTTTGATTTG TACCGCGGAA AGACTATTGG TATCGTTGGC
GAGTCCGGTT CCGGTAAGTC GGTTACTTCT TTGGCTGTGA TGGGCTTACT CGATAAGAAT
GCTAGTGTTA AAGGTTCGGT TAAGTATAAG GGCGAGGAGC TTCTTACTAA AACTGATCTT
GAGATGAGTA AGATTCGTGG CAAGAATATT GCCATGGTTT TCCAGGATCC TCTTTCTGCT
TTAACTCCAG TTTTCTCTAT TGGTGATCAG CTTAAGGAAG CTTTGGTTAT TCATAACCCG
GACATGAGCG AAGAGCAGAT TCGCGAGCGT TCTATTGAAT TGCTTGATTT GGTTGGTATT
ACTAAGCCGG CTGAGCGTTT GAAGGCTTTC CCTCACGAGT TTTCTGGTGG TATGCGCCAG
CGCGTGATGA TTGCTATGGC AATTGCTAAC AATCCGGATA TTATTATTGC AGACGAGCCT
ACTACCGCTT TGGATGTGAC TATTCAGGCT CAGGTTTTGG AAGTTTTGAA GAAAGCTCAG
CGCGAAACCG GCGCTGCAAT GATTTTCATT ACTCACGATT TGGGCGTAAT TGCTGGCGTT
GCAGACGAAG TTATTGTTAT GTACGCGGGC CATTTGGTTG AGCATAATAG CGTTGAGGAG
ATTTTTGCTC ACCCAACTCA GCCGTACACT ATTGGCTTGT TGGGCGCTGT TCCTCGCGTT
GATCAAAAGC GCACTCGTCG TTTGACTCCA ATTTCTAAGC CGACTATGGA TATGCTTATG
GCTGAAGAAG AGAGCGGCGA CGACAGCACT ATGATTGGTC TTGAAGCGGA AAGCGAAACT
GTTCGCTCGC TGCTTCATGC GGAAACCGAA AAGCCAATTA AGCCAATGTT TGAAGGCATT
CCTCGTGAGC AACGAAAAGT TGTTTTGGAT GTTAAGAACT TGGTTAAAAC ATTCCCAATT
ACTAGCGGCG GCTTCTTGCG ACGTAAGGTT GGCGAAGTTC GCGCGGTTGA TGGTGTGAGT
ATTGAGGTTC GTGAAGGCGA AACTGTGGCT TTGGTTGGCG AGTCTGGTTC TGGTAAGTCC
ACGACTTTGA TGGAGATTAT GGGCTTGAAG AAGCCTGAGT CTGGTTCTAT TACAGTTTTT
GGTACTGAGT TGAACGATAA GTTGACTCGT GAGCAGCGTC GCGAACTTCG TTCTAAGATT
CAGTACGTGT TCCAGGATCC AATGAGTTCT CTTGATCCTC GTATGCTTGT TTACGATATT
TTGGCCGAGC CTTTGCTTGT GCAAAAGAAG TCGAAGGAAG AAATTCGCCA GCGTATTGCT
GAGCTTATGC AATTGGTTGA GTTGAATCCT GATCAAGTTG ATCGCTTCCC AACGCAGTTC
TCCGGCGGCC AGCGTCAGCG TATCGCTATT GCTCGCGCTT TGGCTGTGAA TCCTAAGCTT
TTGCTTCTTG ATGAGCCAGT TTCGGCTTTG GATGTTTCTA TTCAGGCTGG AATTATTAAC
TTGCTTGAAG ATTTGCAAGA CAAGTTGGGT GTTGCTTACT TGTTCGTGGC GCATAACATG
GCTGTTGTTC GACATATTTC TAGCCGAATT GCTGTTATGT ATCACGGTCG AATTGTTGAA
TCTGGTGAAA CGGATGAGGT GTTTGATAAT CCAAAGCACC CTTACACTCA GGCTTTGATT
AGCGCTGTGC CAATTCCGGA TCCTACAATT GAGAAGAACC GTAAGCGTAT TATTCTTTCT
GAAGAAGATA ATTTTGACGA TGTTAGGTAA
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| Protein sequence | MTDIANNAIK EETTMEDQNN EPLLSVRDLQ VSFASEAGTV HAVRGMNFDL YRGKTIGIVG
ESGSGKSVTS LAVMGLLDKN ASVKGSVKYK GEELLTKTDL EMSKIRGKNI AMVFQDPLSA
LTPVFSIGDQ LKEALVIHNP DMSEEQIRER SIELLDLVGI TKPAERLKAF PHEFSGGMRQ
RVMIAMAIAN NPDIIIADEP TTALDVTIQA QVLEVLKKAQ RETGAAMIFI THDLGVIAGV
ADEVIVMYAG HLVEHNSVEE IFAHPTQPYT IGLLGAVPRV DQKRTRRLTP ISKPTMDMLM
AEEESGDDST MIGLEAESET VRSLLHAETE KPIKPMFEGI PREQRKVVLD VKNLVKTFPI
TSGGFLRRKV GEVRAVDGVS IEVREGETVA LVGESGSGKS TTLMEIMGLK KPESGSITVF
GTELNDKLTR EQRRELRSKI QYVFQDPMSS LDPRMLVYDI LAEPLLVQKK SKEEIRQRIA
ELMQLVELNP DQVDRFPTQF SGGQRQRIAI ARALAVNPKL LLLDEPVSAL DVSIQAGIIN
LLEDLQDKLG VAYLFVAHNM AVVRHISSRI AVMYHGRIVE SGETDEVFDN PKHPYTQALI
SAVPIPDPTI EKNRKRIILS EEDNFDDVR
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