Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_1235 |
Symbol | |
ID | 8709916 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 1468380 |
End bp | 1469264 |
Gene Length | 885 bp |
Protein Length | 294 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 646483323 |
Product | acyltransferase |
Protein accession | YP_003374428 |
Protein GI | 283783674 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0204] 1-acyl-sn-glycerol-3-phosphate acyltransferase |
TIGRFAM ID | [TIGR00530] 1-acyl-sn-glycerol-3-phosphate acyltransferases |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00000143231 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGTATCAA AAGGAAAACC TTCGCCAAGA AGTGCAGTAA AACCACTCAG TGATGAGCAA GTAAAGCTTT TAGCAAGTAA ACACAATTTA GTTGATCCAA CGTATTACTA TCCAACAGGA AAACGTAAGC CAAATCAGGC AGAAATTGAC GCGCAAAATC CTAAGGCTGC TGAAAGATTG TTAGAAGGAA CGTCGCGCGT ATTGCGTTCG CGCTGCAAAG TACGCGCGTG GGGATTGGAA AACGTGCCAG AAGAAGGCGT GTTTATTACA GCTTGCACGC ATGTGACGAT GTTTGACGTT TTCATACCTA TGACTGCACT ATTCCACCAA GGTCGTCGTC CGCGCTACAT GGCAAAAGCG GAACTCGCTC ACTGGCCAAT CTTAGGCAAA TGGTTTCAGC TTGTAGGCAT GCAGTCGGTT CCTCGCAGAA GCGGAAAAGC GCGAGAAATA GAAGAAGAAT CTATTAAAAT CCTCACCAAT GGCAGACCTT TAAGTGTATG GCCTGAAGGA ACAGTTACGC GCGATCCTAA AAAATGGCCG ATGAGCATGA AGCCCGGAGT TGGAATAATC GCTCTCGAAG CATCGCGTAG ACTCGGACAT CAGATTCCGC TATTTTGCGC TGTTGTGTGG GGTGCTGCAA GCATTAACCA CTGGTGGCCG TGGCCAAAGA AAAATGTTGT AATGTGCTAC GATACCCAAC TCGATTATTC CGACTTGCTG CAGGGAAGCG AAAATTGGGG AGAGCTACCT CCTCTTGAAT CTGCTGAAGA GTTGGCTCGT CGCGTGCGTG TGCGTATGAC GCAGATTATG GAAGAAATTC GTGGAGAAAA ATCTCCTGCA GGATACTTCG ATTACAGGCA GATGAAACGC GTTACGGAAG AATAA
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Protein sequence | MVSKGKPSPR SAVKPLSDEQ VKLLASKHNL VDPTYYYPTG KRKPNQAEID AQNPKAAERL LEGTSRVLRS RCKVRAWGLE NVPEEGVFIT ACTHVTMFDV FIPMTALFHQ GRRPRYMAKA ELAHWPILGK WFQLVGMQSV PRRSGKAREI EEESIKILTN GRPLSVWPEG TVTRDPKKWP MSMKPGVGII ALEASRRLGH QIPLFCAVVW GAASINHWWP WPKKNVVMCY DTQLDYSDLL QGSENWGELP PLESAEELAR RVRVRMTQIM EEIRGEKSPA GYFDYRQMKR VTEE
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