| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1203 |
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| Symbol | |
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| ID | 8709294 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 1430272 |
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| End bp | 1431633 |
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| Gene Length | 1362 bp |
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| Protein Length | 453 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646483292 |
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| Product | hypothetical protein |
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| Protein accession | YP_003374398 |
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| Protein GI | 283783644 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG2508] Regulator of polyketide synthase expression |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00000129823 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACGAGA AGAATACACC TCAGTTTGCG CAAGATAGCA GCGCTGCTTC TTCTGTTATG
TCCGAAGAAA ATTATGAAGA TAAACTTGCA GGAAACAGCT TACTTAGTAA CGATTTTCTT
TCGATACTAG CAAGCGTACA GGCAGCAGAA AAGCACGCGG AGGATTCTAA TATTGCCAAT
TCTCTTGAAA ATCAACAGTT AAACAAAACG CAAGTAAACG CTGTATCAAA TGATCAAGAA
AGCTCTTCTA CAGCAAAGCA ATCTAAAGCA GAGCAAGAAA ACGAAGAAAA GCACAAACAC
CACTTGTGGC ATCGTCTTTC ATCAAATCAA AGTCGTTCGA GTCATTCAAG TCAATCTTCT
GAAAATACTA AAGGTAATAA TTCACCGAGT TTTACTCCAT TGCCCAGCGC GCAAAAATCA
ACTAGCTCGG AACCGCTTAG AATTTTCGAC AATCGTGATG GCCAAGTTTT TGACGCGGCG
ATGCGCTTGC AATTACACTC GATTATTGCC ACGTGTTTAA TGAATGGTAT TGCAGACGCT
CGTATTGACG CTTTCATGCA TTTACTTCAA TGGTCAGATT CGCCAAAAGT TATTGTTATT
GCAGGAACTT TCGGCACTGC AATTAAGCCA GATGACGGAC CAAATCGCAA GCCAGCACCA
GATATTCCAC CTGATAACAC TGACACTTTG CGTCGAAATA TTTGGCCACA GCTTGGTAGT
TGCAATGCGT ATGATGCAAT AGTTGAGCGC ACACAAAGTA GTGCTTTGCA GCGCATTACG
GGAGCTTGGC AAAAAACGCA AGCACTGATA TCAGCATCTA CGAAAAATTC TTCTACTTTT
GCAGCGCCTT CTCATATTAT TCTGCTTGCT GTGCGCGAAA ATCCTAGCGA TCAGGCTTTA
GAGAAGCTGT GCAAAGTTTT TGAGAATTCT CATAAGACGA TTTGTGTTAG CAGCATGGTT
GAAGGCGTTG AGCAGATTTC TTCCGCTCTT ACTGCTACTC TTGCCGCGAT TGCTGTTGCT
CCAGCAGTAA AGCATTTGCC GCAAATCATT CACACAGATG ATTTGCTTCC AGAACGAGCG
CTTATTGGCG ATGCCACAGC TTTTGATACT CTTTACAACA AGGTGTATCA AAGTTTGGCT
CCTTACAATC ATGACGATCC GACTCTGGAA ACTATTGACA TGTTCTTACG CTTTGGTGGA
GCTCTTGACC AAACAGCACA CGAACTTAAT GTGCATCCAA ATACTGTTCG TTACCGTTTA
CGTAAAGTTG CGCAAACTAC AGGATGGGAT GCTACGGATC CGCGCGCCGC TTATGTACTG
CAAACAGCTA TAACAATTGG CAGAATTCGT GATTCGCACT AA
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| Protein sequence | MDEKNTPQFA QDSSAASSVM SEENYEDKLA GNSLLSNDFL SILASVQAAE KHAEDSNIAN
SLENQQLNKT QVNAVSNDQE SSSTAKQSKA EQENEEKHKH HLWHRLSSNQ SRSSHSSQSS
ENTKGNNSPS FTPLPSAQKS TSSEPLRIFD NRDGQVFDAA MRLQLHSIIA TCLMNGIADA
RIDAFMHLLQ WSDSPKVIVI AGTFGTAIKP DDGPNRKPAP DIPPDNTDTL RRNIWPQLGS
CNAYDAIVER TQSSALQRIT GAWQKTQALI SASTKNSSTF AAPSHIILLA VRENPSDQAL
EKLCKVFENS HKTICVSSMV EGVEQISSAL TATLAAIAVA PAVKHLPQII HTDDLLPERA
LIGDATAFDT LYNKVYQSLA PYNHDDPTLE TIDMFLRFGG ALDQTAHELN VHPNTVRYRL
RKVAQTTGWD ATDPRAAYVL QTAITIGRIR DSH
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