| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1182 |
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| Symbol | |
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| ID | 8708941 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1385911 |
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| End bp | 1387167 |
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| Gene Length | 1257 bp |
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| Protein Length | 418 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 646483272 |
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| Product | ABC transporter, ATP-binding protein |
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| Protein accession | YP_003374379 |
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| Protein GI | 283783625 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1134] ABC-type polysaccharide/polyol phosphate transport system, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGAGA TTGAGTTGAC AAATACTGAA AAAGAAGAGT TGCAACCAGT CGTACTTTCA
GTAGAACACG TAGGCAAATA CTTTAAGCTA CCAACTGAGC AAGCAAGCGG TTTGAAACAG
GCGTTTATTA ATTGGACGCG TGGTATCAAA GGCTACAAAG AACAGCACGT TCTGCGTGAT
ATCAACTTTG AAGTACGCAA AGGCGACTTC TTCGGCATCG TAGGACGCAA CGGAAGCGGC
AAATCAACCC TACTCAAACT CATCTCTGGA ATCTACGTAC CAGACTCCGG ACGCATACAC
GTCAACGGAA AACTCGTGCC ATTCATTGAG CTTGGCGTAG GCTTCAACCC AGAACTAACC
GGTCGCGAAA ACGTGTTTTT AAATGGAGCA CTATTAGGTT TTACGCGCTC GCAAATTGAA
AACATGTATG ACGATATAGT GCATTTTGCA GAACTTGAAG AGTTTATGGA TCAAAAGCTT
AAAAACTACT CTTCTGGTAT GCAAGTGCGT CTTGCATTTT CAGTTGCAAT TCAAGCTCAG
GGAGATATTC TAGTACTTGA TGAAGTTCTT GCAGTTGGAG ATGAAGCTTT TCAAAGAAAA
TGCGATGAAT ATTTTGCAAA GGTTAAAAAA GACGTAAGTA AAACAGTTAT TCTCGTTACG
CACGATATGA ACGCAGTAAA GCGTTATTGC AATAAAGCTG TTCTTATTAA GAATGGCGAA
GTGATTGTTA ACGGAGATAA AGACGATGTT GCAAATCGTT ACACCCTAGA AAATCTTTCT
AGCCAAAATG GCGGAGAAAG TGAAGATGGT TATGCTGTTG GTTTGAATGA GCGAGTGCCA
TTTATGCGCA TTGTTCCTTT GAGTAAGCAG TTGCTTAGTT GTAAAGAAAA ATTCCGTTTT
GCTATTGAAT ATGAATTCAA TGAGCCTGGA AAATATTTTA TAGCTGTAGC AATGCACGAT
ATAAAACGTG GAGGAATCAC GTATGATTCT GGAGCAGATA AAATTGAGCT AGAAGGAACA
GGAAGACAAA AAGTTGAATT TGAAGTGCCT CTTAAAATTT TAAATAATGG CGAATTTAAG
CTGGTTGCCT CTCTTCGTAC TAGAAGCAAA ACTGATCCTG AATTAACAGA TATGGTTGCG
TTTACTAACG ACAGTAATTC ATGCATGTTT GCTGTAAGAG ATAGTCGAAA CCGTGAGTAT
GCGCTCTTAA ATGACAATGC AATGACTTTT ACTTGCTTAA AGCATTATAA ATGCTAG
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| Protein sequence | MSEIELTNTE KEELQPVVLS VEHVGKYFKL PTEQASGLKQ AFINWTRGIK GYKEQHVLRD
INFEVRKGDF FGIVGRNGSG KSTLLKLISG IYVPDSGRIH VNGKLVPFIE LGVGFNPELT
GRENVFLNGA LLGFTRSQIE NMYDDIVHFA ELEEFMDQKL KNYSSGMQVR LAFSVAIQAQ
GDILVLDEVL AVGDEAFQRK CDEYFAKVKK DVSKTVILVT HDMNAVKRYC NKAVLIKNGE
VIVNGDKDDV ANRYTLENLS SQNGGESEDG YAVGLNERVP FMRIVPLSKQ LLSCKEKFRF
AIEYEFNEPG KYFIAVAMHD IKRGGITYDS GADKIELEGT GRQKVEFEVP LKILNNGEFK
LVASLRTRSK TDPELTDMVA FTNDSNSCMF AVRDSRNREY ALLNDNAMTF TCLKHYKC
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