Gene HMPREF0424_1167 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_1167 
Symbol 
ID8709493 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp1362858 
End bp1363934 
Gene Length1077 bp 
Protein Length358 aa 
Translation table11 
GC content31% 
IMG OID646483257 
Producthypothetical protein 
Protein accessionYP_003374365 
Protein GI283783611 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000105813 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
GTGGCGTATT GGGAAAGATA TTTAGATAAT GTTGGGGGCA TTATGGCAGA AGAGAAGAAA 
GAGATTGTGA TAATAGATGA AACTACACTT AAAAGTAAGA TTTACTATAT AAGAAATCAA
AAAGTTATGC TTGATTCGGA TTTAGCTGAG ATTTATGGAT ATTCTACAAA AAGATTTAAC
GAACAGGTTA AAAGGAATAT TGAAAAATTT GATGACGATT TTATGTTCCA ATTAACCGAT
GAGGAAGTAT CTGAACTTTC AAGGTCGCAT TTTGCGACCT TGAACAAAGC GCAAGGCAGA
GGCAGTAATA TTAAATACAA ACCTTATGCC TTTACGGAAC AGGGCATCTA TATGCTTATG
ACTGTATTAA GGGGAGAACT GGCAGTTAAA CAGAGCAAGG CTTTAATACG AATGTTTAAG
CAGATGAAAG ACTTCATTGT TGAAAATAGA GACTTTCTTA GTTCAAAAGA AATGACGCAA
CTGTTATTGC AAACAAGTCA AAATACAAAT GATATAATGC AGCATTCAAA AGAAATAGCA
AATATAAACG ATAAAATTAG CACCTTGGCA ACAAAAGAAG ATTTGAAAAA GGTAATGGAT
AATTTTATAG ATAGTAACAC CTACAAGCAT TTTCTTTTGC TGAATGGAGA TAAGATAGAA
GCAGATGTTG CCTATACAAA AATATATAAG TCAGCAAAGA AAAGCATTTA TGTTATAGAT
AACTATATAG GGCTTAAAAC TTTGGAATTT TTAAGGGCTG CAAGAGATAA CATACAAATC
ATAGTTTTTA GCGATAATGT AAGAAATAAA GATATGCTTA CAAAAAATAT TTTAGATGAT
TTTAGAAAAG ATTATCCTAA TATAGACCTG AATCTGAAGG TATCCGATAA AAAATACCAC
GATAGATATA TTGCACTAGA TTTTGGGACA GAAAATGAAG TCTTTTATCT TTGTGGAGCA
TCATCAAAGG ATGCGGGAAA TAAAATATCA AGTATTACTC AAATAGAAGA ATCATCTAAG
GATATGTATC ATACAATGTT TGCTGGAATG TTAAACAATA AGAATTTGAA AATTTAA
 
Protein sequence
MAYWERYLDN VGGIMAEEKK EIVIIDETTL KSKIYYIRNQ KVMLDSDLAE IYGYSTKRFN 
EQVKRNIEKF DDDFMFQLTD EEVSELSRSH FATLNKAQGR GSNIKYKPYA FTEQGIYMLM
TVLRGELAVK QSKALIRMFK QMKDFIVENR DFLSSKEMTQ LLLQTSQNTN DIMQHSKEIA
NINDKISTLA TKEDLKKVMD NFIDSNTYKH FLLLNGDKIE ADVAYTKIYK SAKKSIYVID
NYIGLKTLEF LRAARDNIQI IVFSDNVRNK DMLTKNILDD FRKDYPNIDL NLKVSDKKYH
DRYIALDFGT ENEVFYLCGA SSKDAGNKIS SITQIEESSK DMYHTMFAGM LNNKNLKI