Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_1164 |
Symbol | |
ID | 8709129 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 1359291 |
End bp | 1361084 |
Gene Length | 1794 bp |
Protein Length | 597 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 646483254 |
Product | LPXTG-motif cell wall anchor domain protein |
Protein accession | YP_003374362 |
Protein GI | 283783608 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.0000000159118 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCGTCTAC AGGCTTCAAA GTTAAAACGC GCGGTGGCAC TCGTAGCTGC CTCCTGCACG CTCGGTACCT GCTGCATCGC TGGATCCATA GCGTGGGCGA ATGGTGAACA GGGTAAAGAT GGTGCAAATG TTGGAAACAT CGATGATACT AAAAAAGACA ATGGTACTTC TATAACCATT CACAAGTACC AAAGTCCTGC AACTGATACT AGATCTGATG GATCTAATCA GAGTAATCTT GTTAAGGATA AGAAGCCAGT TAAGGGTGTT GAGTTCAAAG TTTGCAAGGT CACTCTTAAG GAAGGCAAAG ATGCTGATGC CAAGAAGATT GATTTGTCTA CAGCTGAAGG CTGGAAGAAA ATCAAAGACA TCCAGGAGCT TGACCCTTCT TCTGCTACGA AGAATGCAGC TTCATTCCTC AAAGGTGATA ATGCTAAATT CGTAACGGTC GATACTGATT GCAAAAAACA AACAACTGGT GAAGATGGTT CCACAAAGTT TGATAAGCTT GCCGAATCGC TTTACTACGT TGAAGAATCT GACACAAAGG GTGCTCAAAT TAAGGATGCT CAGGGAGCGT GGAAGCCTGT AACTGTTACC GGTAAGGTTG ATCCATTCTT CATCACAACG CCTTTGCCTC ACAAGACTGC AAATACATGG GAATGGTTGT ACGACGTCAA TGTGTATCCA AAGAACGACA CCAGTGACGA CGTTGCTCGT AAGACGCCAA AGACTCCAAC CAAGCTTTAT ACTGATGATG GAGACGCTAT TATCCCATGG GATATTTCTA TGCCTTTGAC TCCTCCTTCT GACAATAAAG CTTATAAGAA GATTGGATTC GTCGATTCTC TTCCTGAAGG TTTGACGTAT GATAGCTTAG CTGAAGTTAA GCTTGTTAAG AAGGGGAAAG CGACTGGTTC TACAGCAAGT GATGTATCTC TTACCGAAAA TACTGACTAC AAGGTTGAGA CTGGTACCGA TAAGAAAAAA GTAACGTTTA GTCTTTCTGT CTCTAGGCTG AAGACGCTCT CTGAAGATTT CAGTAGAAGT ACTTATGTTC TGAAAGTTAC TTTAAAGACG AAGGTTGCTA AGGATATCAA GAACGTTACC AACTCGATTA ACGGCTGGAT TGATGACAGC AAGATTGGTG ATAACGGTGA TTCGGAGCAT CCATGTGTTC CAACTAAGGA AGATCCGAAG AAGTGCGATA AGAACCCTCA CGGTACTTCG CATTTTGCTA CCTTGAAGAT CACCAAGGTT AATGATGCTG CTGATAAAGC TAAGGGCAAG AAGCCATTAA AGGGTGCAGA GTTCACTGTT TACCCAGTTA AAGAAGGTAC AAAGTTTACC GATGTTTCAA GTAAAAATGT AACTAAGGAA ACTATCGATG GAAAGCTTGA TAAAGGTACA AACGATGCCA ACGCTATCAA GCTTAAAGCA ACTGATGATA ATGGTGTAAC CACTGCAAAC TTGTTCATTG GTACTAACGA TGTTGCTTCC AAGATTTACT GCGTTGTTGA GACCAAGGCT CCTGCTGGCT TCAAACTGAA TGAAACCCCA ACTTGCTACG AGGTTAAAGT AGAAACCAAA GAACAGGCAG CAGCAGGTCT TAATAATGAC AACGCTCACG AGATTGTCAA CTCCCAGGCA ACCGAACTCG ACAAGATTCT TGCCAACTTG CCTATGACCG GTGCTCGCGG CTTGGTGATT TTGACGGTTT GCGGCATTGT TGGCATCGCT GGCACGCTCT TCTACATTGT GATGAAGCGT CGCAAGGAGC AGGAACAGGA GTAA
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Protein sequence | MRLQASKLKR AVALVAASCT LGTCCIAGSI AWANGEQGKD GANVGNIDDT KKDNGTSITI HKYQSPATDT RSDGSNQSNL VKDKKPVKGV EFKVCKVTLK EGKDADAKKI DLSTAEGWKK IKDIQELDPS SATKNAASFL KGDNAKFVTV DTDCKKQTTG EDGSTKFDKL AESLYYVEES DTKGAQIKDA QGAWKPVTVT GKVDPFFITT PLPHKTANTW EWLYDVNVYP KNDTSDDVAR KTPKTPTKLY TDDGDAIIPW DISMPLTPPS DNKAYKKIGF VDSLPEGLTY DSLAEVKLVK KGKATGSTAS DVSLTENTDY KVETGTDKKK VTFSLSVSRL KTLSEDFSRS TYVLKVTLKT KVAKDIKNVT NSINGWIDDS KIGDNGDSEH PCVPTKEDPK KCDKNPHGTS HFATLKITKV NDAADKAKGK KPLKGAEFTV YPVKEGTKFT DVSSKNVTKE TIDGKLDKGT NDANAIKLKA TDDNGVTTAN LFIGTNDVAS KIYCVVETKA PAGFKLNETP TCYEVKVETK EQAAAGLNND NAHEIVNSQA TELDKILANL PMTGARGLVI LTVCGIVGIA GTLFYIVMKR RKEQEQE
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