Gene HMPREF0424_1164 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_1164 
Symbol 
ID8709129 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp1359291 
End bp1361084 
Gene Length1794 bp 
Protein Length597 aa 
Translation table11 
GC content43% 
IMG OID646483254 
ProductLPXTG-motif cell wall anchor domain protein 
Protein accessionYP_003374362 
Protein GI283783608 
COG category 
COG ID 
TIGRFAM ID[TIGR01167] LPXTG-motif cell wall anchor domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000159118 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCGTCTAC AGGCTTCAAA GTTAAAACGC GCGGTGGCAC TCGTAGCTGC CTCCTGCACG 
CTCGGTACCT GCTGCATCGC TGGATCCATA GCGTGGGCGA ATGGTGAACA GGGTAAAGAT
GGTGCAAATG TTGGAAACAT CGATGATACT AAAAAAGACA ATGGTACTTC TATAACCATT
CACAAGTACC AAAGTCCTGC AACTGATACT AGATCTGATG GATCTAATCA GAGTAATCTT
GTTAAGGATA AGAAGCCAGT TAAGGGTGTT GAGTTCAAAG TTTGCAAGGT CACTCTTAAG
GAAGGCAAAG ATGCTGATGC CAAGAAGATT GATTTGTCTA CAGCTGAAGG CTGGAAGAAA
ATCAAAGACA TCCAGGAGCT TGACCCTTCT TCTGCTACGA AGAATGCAGC TTCATTCCTC
AAAGGTGATA ATGCTAAATT CGTAACGGTC GATACTGATT GCAAAAAACA AACAACTGGT
GAAGATGGTT CCACAAAGTT TGATAAGCTT GCCGAATCGC TTTACTACGT TGAAGAATCT
GACACAAAGG GTGCTCAAAT TAAGGATGCT CAGGGAGCGT GGAAGCCTGT AACTGTTACC
GGTAAGGTTG ATCCATTCTT CATCACAACG CCTTTGCCTC ACAAGACTGC AAATACATGG
GAATGGTTGT ACGACGTCAA TGTGTATCCA AAGAACGACA CCAGTGACGA CGTTGCTCGT
AAGACGCCAA AGACTCCAAC CAAGCTTTAT ACTGATGATG GAGACGCTAT TATCCCATGG
GATATTTCTA TGCCTTTGAC TCCTCCTTCT GACAATAAAG CTTATAAGAA GATTGGATTC
GTCGATTCTC TTCCTGAAGG TTTGACGTAT GATAGCTTAG CTGAAGTTAA GCTTGTTAAG
AAGGGGAAAG CGACTGGTTC TACAGCAAGT GATGTATCTC TTACCGAAAA TACTGACTAC
AAGGTTGAGA CTGGTACCGA TAAGAAAAAA GTAACGTTTA GTCTTTCTGT CTCTAGGCTG
AAGACGCTCT CTGAAGATTT CAGTAGAAGT ACTTATGTTC TGAAAGTTAC TTTAAAGACG
AAGGTTGCTA AGGATATCAA GAACGTTACC AACTCGATTA ACGGCTGGAT TGATGACAGC
AAGATTGGTG ATAACGGTGA TTCGGAGCAT CCATGTGTTC CAACTAAGGA AGATCCGAAG
AAGTGCGATA AGAACCCTCA CGGTACTTCG CATTTTGCTA CCTTGAAGAT CACCAAGGTT
AATGATGCTG CTGATAAAGC TAAGGGCAAG AAGCCATTAA AGGGTGCAGA GTTCACTGTT
TACCCAGTTA AAGAAGGTAC AAAGTTTACC GATGTTTCAA GTAAAAATGT AACTAAGGAA
ACTATCGATG GAAAGCTTGA TAAAGGTACA AACGATGCCA ACGCTATCAA GCTTAAAGCA
ACTGATGATA ATGGTGTAAC CACTGCAAAC TTGTTCATTG GTACTAACGA TGTTGCTTCC
AAGATTTACT GCGTTGTTGA GACCAAGGCT CCTGCTGGCT TCAAACTGAA TGAAACCCCA
ACTTGCTACG AGGTTAAAGT AGAAACCAAA GAACAGGCAG CAGCAGGTCT TAATAATGAC
AACGCTCACG AGATTGTCAA CTCCCAGGCA ACCGAACTCG ACAAGATTCT TGCCAACTTG
CCTATGACCG GTGCTCGCGG CTTGGTGATT TTGACGGTTT GCGGCATTGT TGGCATCGCT
GGCACGCTCT TCTACATTGT GATGAAGCGT CGCAAGGAGC AGGAACAGGA GTAA
 
Protein sequence
MRLQASKLKR AVALVAASCT LGTCCIAGSI AWANGEQGKD GANVGNIDDT KKDNGTSITI 
HKYQSPATDT RSDGSNQSNL VKDKKPVKGV EFKVCKVTLK EGKDADAKKI DLSTAEGWKK
IKDIQELDPS SATKNAASFL KGDNAKFVTV DTDCKKQTTG EDGSTKFDKL AESLYYVEES
DTKGAQIKDA QGAWKPVTVT GKVDPFFITT PLPHKTANTW EWLYDVNVYP KNDTSDDVAR
KTPKTPTKLY TDDGDAIIPW DISMPLTPPS DNKAYKKIGF VDSLPEGLTY DSLAEVKLVK
KGKATGSTAS DVSLTENTDY KVETGTDKKK VTFSLSVSRL KTLSEDFSRS TYVLKVTLKT
KVAKDIKNVT NSINGWIDDS KIGDNGDSEH PCVPTKEDPK KCDKNPHGTS HFATLKITKV
NDAADKAKGK KPLKGAEFTV YPVKEGTKFT DVSSKNVTKE TIDGKLDKGT NDANAIKLKA
TDDNGVTTAN LFIGTNDVAS KIYCVVETKA PAGFKLNETP TCYEVKVETK EQAAAGLNND
NAHEIVNSQA TELDKILANL PMTGARGLVI LTVCGIVGIA GTLFYIVMKR RKEQEQE