| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1150 |
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| Symbol | |
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| ID | 8709809 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1330147 |
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| End bp | 1332174 |
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| Gene Length | 2028 bp |
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| Protein Length | 675 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646483241 |
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| Product | hypothetical protein |
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| Protein accession | YP_003374349 |
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| Protein GI | 283783595 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0595] Predicted hydrolase of the metallo-beta-lactamase superfamily |
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| TIGRFAM ID | [TIGR00649] conserved hypothetical protein |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.920604 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATATGA AAATAGAATA TGATGAATGT ACTGAGGAAA TTCTTGCTGA AGTAGTACGC
GATGCGTTGC AATCTGACGC TGATAATATG CGTTCTCTTA ATAACCAAGA ATCTTCTGCG
TCGTCTAAGC AAATTCGACA GTCGGTGGAA AAAGTGAATA AAAAAATGTC TGCTGATACT
TCAACTAAAT CAGTATCTAC TAAAGATGTA AAAACTGCTA AAACTAAATC AACTAAAAAA
GCTAAATTCA ACAAAGAAAC TAAAACAGAA AATGCAAAGT CATCAACTCG TAGAACAGGA
AATGTTCTTC CTCCTGTAGT TAACGATCAA AGAGAAGGTG CTCTTATTGC GCCGCCAAAG
TATCGTAAAG GATCAATGCG AATCGTACCG CTTGGCGGTT TGGGTGAAAT CGGCCGCAAT
ATGAACGTAA TTGAATATAA CGGTCATATT TTGCTTATCG ATTGCGGTGT GCTATTCCCA
GAAGAAGAGC AGCCAGGCGT TGATTTGATT CTCCCAGATT TTCACTACAT TCAGGATCGT
TTAGACAAAG TTGAGGCATT GGTTTTAACG CACGGTCACG AAGATCATAT TGGTGGCGTG
CCTTACCTTC TTAAGATGCG TCCCGACATT CCGTTAATTG GTTCAAAACT AACTCTTGCT
TTTGTGGAAG CTAAGTGCAA AGAGCATCAT ATTGATCCGG AGCTTATTCG TGTAGAAGGT
CGCGATAAGA TGAAAGTCGG TCCGTTTAAC CTTGAATTTA TTACTGTTAC GCATTCTATT
CCGGATGCGC TCGCTGTGTG CGTAAAAACT CCAGCCGGAA CGCTTATTGA TACTGGTGAT
ATTAAACTTG ACCAGCTTCC TCTTGACCAT CGCATTACTG ATTTAGTTGA GTTCGGGCGT
TTAGGTGAGC AAGGCATAGA TTTGCTTATG GCTGATTCCA CTAATGCTGA AGTTCCAGGA
TTTGTAAAGC CTGAAACTTC GATTGGTCCG GCTTTGGATC GCGCTTTTGC TGAAGCTACG
CGCAAAATTA TTGTTGCTAG CTTCTCAAGT CACGTTCATC GCGTGCAACA AGTGGTTGAC
GCTGCGCATA AGTTTGGGCG CAAAGTTGTG TTCGTCGGAC GCTCGATGGT TCGCAATATG
TCAATTGCTG CGGATTTAGG CTACTTGCAT ATTCCTGAAA ATACTGTTGT TGACTTAAAA
CAGGCGAAGG ATATTCAGGA TGACAAGCTC GTATACATGT GCACTGGTTC ACAAGGCGAG
CCTATGGCTG CACTCGGGCG TATTGCAGAT GGCAATCACC GAGATATTAC TGTTAATGAG
TTCGACACTG TTATTCTTGC AAGTTCGCTT ATTCCAGGCA ACGAGCATGA GGTTTACAAA
GTTATTAATA AGCTTGTGCA GTTGGGTGCG CGCGTAATTA ACAAAGATAA TGCTGCTATT
CACGTGTCTG GTCATTGCAA TGAAGGCGAG TTGCTGTACT TGTACAACAT TGTGAAGCCA
AAGTGCGCTA TGCCAATTCA TGGTGAGCAT CGTCACTTGG TTGCAAACGG ATTGATTGCA
GTAAAAACTG GCGTTGATCC AAATAACGTT GTGCTTGCTG AAGACGGCGA TGTTGTGGAT
TTGTATCATG GCAATGCTGC AGTTGTTGGT TCTGTGCCAT GCGGTTACGT GTATGTTGAT
GGTGATTCTG TTGGTGAGCT TACAGATGAA GAGCTTGAAA AGCGCAGGAT TTTGGGCACA
GAAGGTTTCG TTTCAAGTTT TGTTGTAGTT GATACAGAGC ACGCTGACGT TGTTTCTGGC
CCAAAGATTT TCTTGAATGC TGTTGCTGAA GACGAGGCTG ATTTTGAGAA GGTTCGTCAT
CAAATTGTTG AACAGTTGCA AGATGCCATG ATGCGCGGAG AGCACGATAC TCATAAGTTG
CAGCAGATTA TGCGACGAAC TTTGGGTAGT TGGGTTGCTC GCGCTTTGCG TAGGAAGCCA
ATGCTTGTAC CGGTAGTTGC GGATATTTCG GAAAATAATC AAGAATAA
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| Protein sequence | MNMKIEYDEC TEEILAEVVR DALQSDADNM RSLNNQESSA SSKQIRQSVE KVNKKMSADT
STKSVSTKDV KTAKTKSTKK AKFNKETKTE NAKSSTRRTG NVLPPVVNDQ REGALIAPPK
YRKGSMRIVP LGGLGEIGRN MNVIEYNGHI LLIDCGVLFP EEEQPGVDLI LPDFHYIQDR
LDKVEALVLT HGHEDHIGGV PYLLKMRPDI PLIGSKLTLA FVEAKCKEHH IDPELIRVEG
RDKMKVGPFN LEFITVTHSI PDALAVCVKT PAGTLIDTGD IKLDQLPLDH RITDLVEFGR
LGEQGIDLLM ADSTNAEVPG FVKPETSIGP ALDRAFAEAT RKIIVASFSS HVHRVQQVVD
AAHKFGRKVV FVGRSMVRNM SIAADLGYLH IPENTVVDLK QAKDIQDDKL VYMCTGSQGE
PMAALGRIAD GNHRDITVNE FDTVILASSL IPGNEHEVYK VINKLVQLGA RVINKDNAAI
HVSGHCNEGE LLYLYNIVKP KCAMPIHGEH RHLVANGLIA VKTGVDPNNV VLAEDGDVVD
LYHGNAAVVG SVPCGYVYVD GDSVGELTDE ELEKRRILGT EGFVSSFVVV DTEHADVVSG
PKIFLNAVAE DEADFEKVRH QIVEQLQDAM MRGEHDTHKL QQIMRRTLGS WVARALRRKP
MLVPVVADIS ENNQE
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