Gene HMPREF0424_1038 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_1038 
SymbolpurE 
ID8708947 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp1181284 
End bp1181781 
Gene Length498 bp 
Protein Length165 aa 
Translation table11 
GC content45% 
IMG OID646483131 
Productphosphoribosylaminoimidazole carboxylase, catalytic subunit 
Protein accessionYP_003374243 
Protein GI283783489 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0041] Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase 
TIGRFAM ID[TIGR01162] phosphoribosylaminoimidazole carboxylase, PurE protein 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCAGAAG TAAAGCCAAC CGTCGCTGTC GTAATGGGAT CCTCAAGTGA TTGGGAAACC 
ATGCGTCATG CTTGTGAAAT TCTAGATAAA TTCCAAGTTC CGTATATGAA ACGAGTTATT 
TCCGCACATC GTACACCGGA ATTAATGGCA GATTTTGCGC ATAATGCTCG CTCAAACGGT 
TTCCACATTA TTATTGCTGG AGCCGGTGGA GCCGCCCACT TGCCTGGCAT GATTGCGGCA 
CAAACCACGC TTCCTGTTAT TGGAGTGCCA GTACGCTCGC ATGCGCTATC AGGCTGGGAT 
TCATTGCTTT CAATAGTACA AATGCCAGGA GGTATTCCTG TTGCAACTAC TGCAGTTGGA 
AACTCTGGTG CGACAAATGC TGGATTGCTT GCTGTAAGCA TTCTAAGTAC AACTGATAAT 
CGTCTTGCTA AAGAACTAGC AGAATATCGC AATGAACTAA AAGAAAAAGT CGAGGAATCA 
AATGCCAACC TTATCTGA
 
Protein sequence
MSEVKPTVAV VMGSSSDWET MRHACEILDK FQVPYMKRVI SAHRTPELMA DFAHNARSNG 
FHIIIAGAGG AAHLPGMIAA QTTLPVIGVP VRSHALSGWD SLLSIVQMPG GIPVATTAVG 
NSGATNAGLL AVSILSTTDN RLAKELAEYR NELKEKVEES NANLI