Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_1025 |
Symbol | |
ID | 8709996 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 1157067 |
End bp | 1158080 |
Gene Length | 1014 bp |
Protein Length | 337 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 646483118 |
Product | sortase family protein |
Protein accession | YP_003374231 |
Protein GI | 283783477 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3764] Sortase (surface protein transpeptidase) |
TIGRFAM ID | [TIGR01076] LPXTG-site transpeptidase (sortase) family protein |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTTTGA CTAAATTTGC AAAAGCTTGC CGCGATAGCT TAGAGAGGCT AGTTCGATTC GCAGGCTTAC ATATTCTTAA ATCCACTCCC AATGAATCGT CTGCAAACGA ATCTTCTGCA GACTCAGATT CTGCAAATCC CAAAAAATCT GTTTTTAAAT GCGTTATTGA ACCAATCATT CTGGCGCTAG CTGCAATTCT ATGCTTCACC TACCCAGTGG CATCAACACT GTGGAATAAT CACGTGTCTA AACAAATTTC CATAGATTAC GACAAAGTAA CTTATAATCA AGCCGCTAGC GTGCGACAAT CTATTCTAAA AAGTGCGCGA AAATACAATG CGCGCAGAAA AAAAATTTTT ACAGCCGATC CGTATGACGG TAGTGACAAT TACAAAAAAA CAGCAGACTA TAAGTCATAT ATCAAACAAC TAGACGAACC AATGGGAATT ATGGGAATCA TAAAAATCCC AAAAATAGGC GTAAAACTAC CGATTTATCA TGGTGCTTCG CGCGATGTTC TAGCTCGCGG AGCAGGGCAC TTGTATGGCA CAGATTTGCC AGTGGGCGGC AAAAACAGGC ATACTGTTAT CACAGCTCAT ACTGGTTTGC CTACAGCAAC CATGTTTGAC GGTTTAATCG ATATGAAGCG TGGAGACTAC TTCTACATTG ATGTACAGGG CTATACAATG CGCTATAAGG TGTTTCGCAT TAGCGTGGTT GATCCGCATG ATATTAGTTT GTTGCAGCGT GAAAAGGGTC GCGATTTAGC GACGTTGCTT ACATGTACGC CGTATGGTGT TAACTCGCAT AGATTGCTAG TGACGGGGTA TCGCGTGCTG CCGGACCCAG CGCATGCTCC AGAAGATCAT CTTCAGTGGC CATTCTGGAT GACTATGTTC CTTATAGCAT TGATAAGTTG CGCGGTGGTT CTTGCCACAA TGATTATTGC TATAGTTCGA AAACGTCGTA ATAATAATAT TGCGCCGCAA GGAATGCATA TTTGTGAAAA ATAA
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Protein sequence | MSLTKFAKAC RDSLERLVRF AGLHILKSTP NESSANESSA DSDSANPKKS VFKCVIEPII LALAAILCFT YPVASTLWNN HVSKQISIDY DKVTYNQAAS VRQSILKSAR KYNARRKKIF TADPYDGSDN YKKTADYKSY IKQLDEPMGI MGIIKIPKIG VKLPIYHGAS RDVLARGAGH LYGTDLPVGG KNRHTVITAH TGLPTATMFD GLIDMKRGDY FYIDVQGYTM RYKVFRISVV DPHDISLLQR EKGRDLATLL TCTPYGVNSH RLLVTGYRVL PDPAHAPEDH LQWPFWMTMF LIALISCAVV LATMIIAIVR KRRNNNIAPQ GMHICEK
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