| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0879 |
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| Symbol | clpP_2 |
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| ID | 8709903 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 997635 |
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| End bp | 998246 |
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| Gene Length | 612 bp |
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| Protein Length | 203 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646482979 |
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| Product | Clp protease |
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| Protein accession | YP_003374095 |
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| Protein GI | 283783341 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0740] Protease subunit of ATP-dependent Clp proteases |
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| TIGRFAM ID | [TIGR00493] ATP-dependent Clp protease, proteolytic subunit ClpP |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGACTGAAC TTTTTACAGC TTCTCCCGTG ATGGAACAGG CTGAAGCACC TACATCAACT
GATCCTATTT TTAATCGGTT GCTAAAAGAT CGAATTATTT GGTTGGGATC TGAAGTAAAA
GATGAGAATG CTAATGTTAT TTGCGCGCAA ATGTTAATGC TTGCTGCGGA AGATCCTAAG
AAGGATATTT GGTTGTATAT TAATTCGCCT GGAGGTTCAA TTACTGCTGG TATGGCAATT
TACGATACTA TGCAATTAAT TGAGCCGGAT GTTGCGACTA TTGCTGTTGG AATGGCTGCA
TCTATGGGCC AGTTCTTGCT TAGTTCTGGC ACTCCTGGTA AGCGTTATAT TACCTCACAT
GCTCGTGTGC TTATGCATCA ACCTTCTGGC GGTGTCGGTG GCACTGCTAC GGATGTGCGA
ATTAACGCAG AGCTTATTAT GGATATGAAA AAAACGCTTT CTGAATTGAC TGCAAAGCAG
ACTGGTCATA CGGTAGAGGA AATTTACCGA GATAACGAAT ATGATCACTG GTTTACAGCT
CAGCAAGCTT TGGAGTATGG TTTCGTAGAT AAGATTGTGA CCACTCCTGC TTCTATGCGC
GGTGAGGAGT AA
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| Protein sequence | MTELFTASPV MEQAEAPTST DPIFNRLLKD RIIWLGSEVK DENANVICAQ MLMLAAEDPK
KDIWLYINSP GGSITAGMAI YDTMQLIEPD VATIAVGMAA SMGQFLLSSG TPGKRYITSH
ARVLMHQPSG GVGGTATDVR INAELIMDMK KTLSELTAKQ TGHTVEEIYR DNEYDHWFTA
QQALEYGFVD KIVTTPASMR GEE
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