| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0874 |
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| Symbol | |
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| ID | 8708911 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 991036 |
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| End bp | 993360 |
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| Gene Length | 2325 bp |
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| Protein Length | 774 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646482974 |
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| Product | nucleoside triphosphatase, D5 family |
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| Protein accession | YP_003374091 |
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| Protein GI | 283783337 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3378] Predicted ATPase |
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| TIGRFAM ID | [TIGR01613] phage/plasmid primase, P4 family, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCTAG AGAAACTGCC AAAAGCACTA AAGAACAAGA ATATCTTTTG TTCATGGAAG
TACGAGCAGC AAGAAAACGG TAGGCTCACT AAGCCGCCTT ATAACCCCAT AACGGGAAAG
AAAGCAGCTA CAGACAACTT AAGCGATTTC ACCTCGCTTG ATGATGCCAT GAAAGTAAAA
GACCAATACG ACGGAATTGG TATAAAGCTT GTTGATAACC TCTTAGGCAT CGATTTAGAC
CACTGCATCG ATAATGGCAT CATTAAAGAC TGGGCAAAAG AGATTATTGC CCATTTCAAG
CACGCTTATA TCGAATACAG CCCAAGTAAG CATGGCTTTC ATATCTTGCT TCTGTTTAAC
GGCGCATACG ATAAAAAGTC TTATTACATC AAGCATGGGG ATATTGAGGT TTACAGCGCT
CTAGCTACGA ATCGCTATCT AACAGTTACG GGCGACGTGT ATCAGGAAGG CGAGCTTTTA
GAAGACGATG AAGCCATCAT GTGGCTTTTA GACACGTACA TGAAGCGAAA CATAAACACT
CATGAAAAAG AAAATAACGC GTGTACAAGG TCATATTTAA GCGATACATC TGTTATTGAA
AAAGCTGGCA ACGCCATAAA TGGAGCTAAA TTTACAGCAC TTTGGCATGG TGACATTTCG
GCTTACCCTT CTCATAGCGA AGCAGATGCC GCGCTTGTGT CTATTCTTGC CTTTTACTGT
GGCGGTAACA AGGAGCAAAT AGACCGACTT TTTCGTAAGT CTGCTTTATT CCGTCCTAAG
TGGGATGAAC ACCGTGGCGC GGATACTTAT GGCAACACAA CCATTCAGAA AGCTGTTTCT
AAATGTCATA CCTTCTATGA GCCTTTCCAT AATGCAAGTG CTGAGGAAGA CTTTGATGAT
CTCTTATCTA AATTACAGGA ACTAAAGCCT GATGAAAATA TACGATATCG CAACGGTGAT
TTAGGTAATG GCAGATTGTT TGCTGATATT TTCCAAAACA TTCTGCACTA TGTACCGGAG
CGCAAAATGT GGTTCATCTT CGATGGTGTA CGTTGGACTT GCGATATTGG AACGCTTAAA
ACGATGGAAC TATGCAAGGA TTTAGCTCTT TCTCTTATAC GTTATGCTGG TGTCATTAAA
GACGAGAGAA CCCGTTCAAT GCTTGTTGAG TATTGGAACA AATGGAGCAG CCGTCGTAAC
CGTGAGATTT ATATCAAGGA AGCTCAAAGC GTTTACCCCA TTTCGATGGA AGCGTTCGAT
AAGAACATTT ATCTATTTAA CTGCCAAAAC GGAACTTTAG ACCTTCAGCA CGGTGTATTT
CGCAAGCACT TAGCAACAGA TCTTATTACC AAAGTATCAC CTGTGTTTTA TGACCCGAAG
GCAAGAAGTG AACGTTTTCG CCAGTTTGTC GATGAAATTA TGAGCGGAGA TTGTGAGAAA
GCCTTGTATC TTCAAAAGTC ATTAGGCTAT GCGTTAAGCG GTGATACACG CTATGAGTGC
ATGTTCTTTC TTTTTGGAGA AAGCACAAGA AACGGTAAAG GCACACTCAT GGAAAGCGTT
CTGTCTGTGA TGGGCGATTA CGGAAAAGCG GTACGCGCGG AAACCATTGC TCTAAAGAAG
AACCCTAATA GCTCACAGCC GACCGAGGAT GTAGCACGCC TTGCCGGTGT TCGCTTTGCC
AATATATCTG AGCCGAGCCG AGGACTATTC CTTAATTCAG CCCAAGTTAA ATACATGACG
GGAAGTGATA CCTTAAACGC TCGATTCCTG CATGAGAACA GTTTTGACTT TAAACCACAG
TTCAAACTGT ACGTGAACAC CAATTATCTG CCCGTCATCA GCGATATGAC AGTGTTTAGT
AGCGACCGCA TGCAGATTAT TCCCTTTAAC AGGCATTTTG AAGCGTGGGA ACAGGATAAA
ACCTTAAAGG CGGAGTTTTC TAAAAAAGAG GTGCAAAGTG CCATTTTAAA CTGGCTTCTT
GAAGGCTTTA CCCACCTCCG AGATGAAGGC TTTAAGCCGC CTAATAGCGT TCTTGATGCC
ATTTTTAGTT ATGCCCACGA CAGTGACAAG ATGGCACAGT TTGCTGAAGA TGTACTCGTT
AAAGACCAGA GCTCTGAGAT TCGAACGGCA GTTGTATACG ACCACTACAA GAAGTGGTGC
ATTGATAACG GCTGTTTTTC TGAGAACAGC AGAAACTTCA ATCAGGAATT AAGAAAATTT
GCCGAGGTTG TAAGAAAGCG TCCCAAGACA GGCGGAGAAA AAACCACGCT TCTTAAAGGC
TACAGGCTTA AAAGTGAGTT TAGCGATTTT TTAAGTGGCA ACTAG
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| Protein sequence | MDLEKLPKAL KNKNIFCSWK YEQQENGRLT KPPYNPITGK KAATDNLSDF TSLDDAMKVK
DQYDGIGIKL VDNLLGIDLD HCIDNGIIKD WAKEIIAHFK HAYIEYSPSK HGFHILLLFN
GAYDKKSYYI KHGDIEVYSA LATNRYLTVT GDVYQEGELL EDDEAIMWLL DTYMKRNINT
HEKENNACTR SYLSDTSVIE KAGNAINGAK FTALWHGDIS AYPSHSEADA ALVSILAFYC
GGNKEQIDRL FRKSALFRPK WDEHRGADTY GNTTIQKAVS KCHTFYEPFH NASAEEDFDD
LLSKLQELKP DENIRYRNGD LGNGRLFADI FQNILHYVPE RKMWFIFDGV RWTCDIGTLK
TMELCKDLAL SLIRYAGVIK DERTRSMLVE YWNKWSSRRN REIYIKEAQS VYPISMEAFD
KNIYLFNCQN GTLDLQHGVF RKHLATDLIT KVSPVFYDPK ARSERFRQFV DEIMSGDCEK
ALYLQKSLGY ALSGDTRYEC MFFLFGESTR NGKGTLMESV LSVMGDYGKA VRAETIALKK
NPNSSQPTED VARLAGVRFA NISEPSRGLF LNSAQVKYMT GSDTLNARFL HENSFDFKPQ
FKLYVNTNYL PVISDMTVFS SDRMQIIPFN RHFEAWEQDK TLKAEFSKKE VQSAILNWLL
EGFTHLRDEG FKPPNSVLDA IFSYAHDSDK MAQFAEDVLV KDQSSEIRTA VVYDHYKKWC
IDNGCFSENS RNFNQELRKF AEVVRKRPKT GGEKTTLLKG YRLKSEFSDF LSGN
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