Gene HMPREF0424_0868 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0868 
Symbol 
ID8709400 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp980815 
End bp981615 
Gene Length801 bp 
Protein Length266 aa 
Translation table11 
GC content43% 
IMG OID646482968 
Productconserved hypothetical protein TIGR00730 
Protein accessionYP_003374085 
Protein GI283783331 
COG category[R] General function prediction only 
COG ID[COG1611] Predicted Rossmann fold nucleotide-binding protein 
TIGRFAM ID[TIGR00725] conserved hypothetical protein, DprA/Smf-related, family 1
[TIGR00730] conserved hypothetical protein, DprA/Smf-related, family 2 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTAATA GTAAAGATTT TTCAGTAGAT GTTCCACCTT GGAATAACAC GTATCATCGT 
GGTTCTGTTG TAATGCGCGG TTCTATGATT CCTAAGGAGA GCACTACAGA AACGCTTCTT 
CGTAACGATA ACAATCAGCA GCTTGTTTCT GGAGTTGGTG TAGAAGTAGA TAAGAAATGG 
GATTGGCGTA GCGCGGATCC GTGGCGTGCG CTTCGTATTC AAGCTGAGTT TGTTGATGGT 
TTTGACGCGC TCGCATCGTT AGGTAAAGCT GTTAGTATTT TTGGTTCTGC TCGAATAAAA 
GAAGATGATC CTGAGTATTC TTTAGCTCGT ACTATGGGTT CAGAGCTTGC AAAACGTGGT 
TTTGCTGTTA TTACAGGTGG CGGTCCTGGA ATTATGGAAG CTGCAAACCG TGGAGCTGCA 
GAAGCTGGTG GTACGTCTGT AGGATTGGGG ATTGAGCTTC CTCATGAGCA GGGTTTGAAT 
AAGTGGATTA ATCTTGGCAT GCAATTTCGG TATTTTTTCG TGCGTAAAAC AATGTTTATG 
AAGTATTCTT CTGGAATTAT TGTGTGCCCT GGCGGTTTTG GCACGATGGA TGAAATGTTT 
GAAGCTTTGA CTCTAGTGCA AACGCATAAA GTTGCGCGCG TGCCTGTTGT TCTTTTCGGT 
ACTTCGTATT GGAATGGTTT GATTGACTGG CTGAAGTCTA CAGTAATTCA ACGAGGTTTT 
ATTTCTTCAT TAGATCCGCA CTTATTTGCT GTCACAGACG ACCCAATAGA GGCGGTGCGA 
ATAGCATCTG GAATTGAATA A
 
Protein sequence
MSNSKDFSVD VPPWNNTYHR GSVVMRGSMI PKESTTETLL RNDNNQQLVS GVGVEVDKKW 
DWRSADPWRA LRIQAEFVDG FDALASLGKA VSIFGSARIK EDDPEYSLAR TMGSELAKRG 
FAVITGGGPG IMEAANRGAA EAGGTSVGLG IELPHEQGLN KWINLGMQFR YFFVRKTMFM 
KYSSGIIVCP GGFGTMDEMF EALTLVQTHK VARVPVVLFG TSYWNGLIDW LKSTVIQRGF 
ISSLDPHLFA VTDDPIEAVR IASGIE