| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0862 |
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| Symbol | |
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| ID | 8710023 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 975089 |
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| End bp | 976588 |
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| Gene Length | 1500 bp |
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| Protein Length | 499 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646482962 |
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| Product | CBS domain protein |
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| Protein accession | YP_003374079 |
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| Protein GI | 283783325 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1253] Hemolysins and related proteins containing CBS domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATATA TTAAACGAAT ATTTTCTAGC ATATCAGTTC CGCAATTGCC GTTGCATGTC
TGGATTGGTT TAGCCGCATT GCTTGTGCTG GCAATGCTGC TTGTATGGCT TTCGCTTGCG
ATGGCTGCTG CAGAAGGTGC AGTGCCTAGA GTTACTCGTG CAAGCTTAAA TAATCTTATG
ATTGAAGCGC AAACGCATGA TGATGAAACT AGTGCCATAG TGCGTATGCG TCGAATTGCT
AGAATCCATC GTGTAAAAAA ACTGATTGCT GACCGTTATA CAACTTCTGG AGCATGCGCT
TTTGTGCGTG TGCTATGTAA CGTTTTAGAT GGAGTTTTGT TTGCTTCTTT AGCTGCATTT
TTCGGCTCGC CTTTATGGGT AACTCTTATT ATTGGTGTTG TTGTTTCAGT AGTTGTAGCT
GTGATTTCTA TTCTTGTTCG CCCACGTTCG GTTGGTGCGG CTCAACCTGT AGCAAAGTTG
ATGCGGCTTT CTCGCATTGT GTCTATTGCT ATTGCGATTA ATCCTTTAGT GCATATTGCT
AGCGATGTTG ACGTCACTTC TAGGAAAAAG CATGTTGATC CGTCAGATGA TGAAGCTTTG
GAAGATATTC AGCTGGATCA AGCAAAGGCT AGTATTGACC GACTTGTTGA AGCGAATGAT
TTCGATCCGG AAGTTTCGGA AATGATGCGC AATGTGCTCA CGCTTTCAGA TACTTTGACT
CGCGAAATAA TGGTACCTAG AACCGATATG ATTTGCGTAA AAAGCGACGA AACGCTGGAA
AATTTCCTTA AATTATGCTC TCGCTCAGGA TTTTCTCGAG TTCCCGTCAT TGGAGATTCT
GTAGATGATT TAGTAGGTGT TGCTTATTTG AAGGATGCTG TACGCGCTAC TGTGTTTAAT
CCTGCAGCAT CTTCTAGAGC AGTTGAAACA ATTAGCCGAG ACCCTATGCT TGTTCCTGAG
TCGAAGCCGG TTGACGATTT ATTCCACGAA ATGCAGCGAA TTCGCCAGCA TGTGGCAGTA
GTGGTTGACG AATATGGTGG AATTGCTGGT TTGGTTACTA TTGAGGATGC TATTGAGCAA
ATTGTTGGCG AGTTGGAAGA TGAGCACGAT CGCACTCAGC ATGCAGATCC GGAAGAAATA
CGTGACGGCG TGTGGAAGAT GCCTGCTCGA ACGTCAATCG CAGATTTGGA AGATATTTTT
GAAGTTCATA TTGACGAAGA CGATGTGGAT ACTGTGTTTG GTTTGCTTAC GAAGTTGATT
GGTAATGTGC CGATTGTTGG TTCCAGTGCT ATTACAAGAG GACTAAAATT AACTGCTGTA
GATTCAGCTG GTAGGCGAAA GAAAGTATCT ACTATTTTAG TAGAACGAGA TGCGCAAGTT
TTGGAAGAGT CTAAGGATAA TCAAAATGAC ATTAGCTCTT CCGAAAAATC TGCTGAAAGC
AAACAAACCA ATGCTTTGAA GCAAGCTAGT ACTATGAAAC AAACGAATAT GCTGAAATAA
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| Protein sequence | MEYIKRIFSS ISVPQLPLHV WIGLAALLVL AMLLVWLSLA MAAAEGAVPR VTRASLNNLM
IEAQTHDDET SAIVRMRRIA RIHRVKKLIA DRYTTSGACA FVRVLCNVLD GVLFASLAAF
FGSPLWVTLI IGVVVSVVVA VISILVRPRS VGAAQPVAKL MRLSRIVSIA IAINPLVHIA
SDVDVTSRKK HVDPSDDEAL EDIQLDQAKA SIDRLVEAND FDPEVSEMMR NVLTLSDTLT
REIMVPRTDM ICVKSDETLE NFLKLCSRSG FSRVPVIGDS VDDLVGVAYL KDAVRATVFN
PAASSRAVET ISRDPMLVPE SKPVDDLFHE MQRIRQHVAV VVDEYGGIAG LVTIEDAIEQ
IVGELEDEHD RTQHADPEEI RDGVWKMPAR TSIADLEDIF EVHIDEDDVD TVFGLLTKLI
GNVPIVGSSA ITRGLKLTAV DSAGRRKKVS TILVERDAQV LEESKDNQND ISSSEKSAES
KQTNALKQAS TMKQTNMLK
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