| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0827 |
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| Symbol | |
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| ID | 8709058 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 936373 |
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| End bp | 938901 |
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| Gene Length | 2529 bp |
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| Protein Length | 842 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 646482927 |
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| Product | DEAD/DEAH box helicase |
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| Protein accession | YP_003374044 |
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| Protein GI | 283783290 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4581] Superfamily II RNA helicase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGGTT TGAGCGAGTT AGCTTTCGAT TTGCATCATG CTAGCGAAGA TGAGATTTTT
CAAGCATTTG TTGATTGGGT TAAAGATAAC AAACATGTAG ATTTGTGGCC GCATCAAGAA
GAATCCATCA TGGATTTGCT TGCAGGAGAC CACGTTATTT TAAACACTCC AACAGGTTCT
GGAAAATCTC TAGTAGCACT CGGCATGCAT TTCACAGCAC TCGCCACCGG CAGACGCTCC
TACTATACTG CGCCAATTAA AGCTCTCGTA TCCGAAAAAT TCTTCGATTT AGTAGCTATT
TTTGGGCGTG ACAACGTTGG TATGATTACA GGCGACTCGC ATATTAATGC GGATGCTCCA
ATAATCTGCT GCACGGCGGA AATCTTAGCA AATCAAGCTT TACGTGAAGG CGTAAATGCT
GAAGTTGATT GCGTTGCAAT GGACGAATTC CACTACTATG GTGATCCAGA GCGTGGATGG
GCTTGGCAAG TTCCGCTGCT TACACTTCCA AATACGCAAT TCTTACTTAT GAGTGCAACT
CTTGGAGACG TAACGGATAT TGCGGAACGC TTAGAAAAAT CAACAAAAAG AAACGTCGAT
ATTATTGCAG ACGCTCCAAG ACCAATCCCA CTCGAATATG AGTACACAGA TAAGCCACTT
GCCACAACTG TAGAACTCTT ATTTAACAAG GGTTTAACGC CAATCTACGT AGTTCATTTT
TCGCAAGACG CAGCTCTAGA AACAGCTCAA GCGCTAGCTA GTACGGGAGT TTCTAGCAAA
GAGCAGCGAG ACAAAATTGC TCAAGCGATT AAAGGCACTA AATTTACTAC AGGCTTCGGC
AAAATTTTGC AAAGGCTACT GCGCACAGGC GTTGGCGTAC ATCACGCTGG CATGCTTCCG
CGCTACCGCA GGCTTGTTGA ACAGCTAGCT CAGCAAGGAT TGTTGCCCGT TATTTGCGGC
ACAGACACTC TTGGCGTTGG TATTAACGTG CCAATTCACT CTGTTGTGCT TACAGCGCTA
ACAAAGTTTG ATGGGAATCG TAGTCGCAAG CTTCGCGCTC GCGAGTTTCA TCAAATTGCA
GGTCGTGCAG GCAGAATGGG GTTTGATACA GAGGGCTTAG TAGTTGCAGA GGCTCCAGAG
TTCGAGATTG AAAACGCGCG CGCTGTTGCA AAAGCTGGCA ATGACCCTAA GAAGCTTAAA
AAAGTTAAGC GTAAGAAGGC TCCAGAGGGC TTTGTTGTTT GGGGCGAACC AACGTTTACT
AAGCTTATTG AAAGTGCTCC AGAAACTTTG AATCCTCATA TGGTTGTAAC GCATTCAATG
ATTTTGAACG AAGTTACGCA AGGCGGAGAC GCTAGAGCAC GCGTTGAAAA ACTTATTGAA
GATAGTGCGC AAAAGCCGCA AGATAAAGAG AAATTGCTTG AGCGTTGCAA CGATATTTTC
CAAACTCTGC TCGATACTCA AGTTATTGAA TCTAAAAAGC GCGCGAACGG TTCTTGCAAT
TATGAGCTTG ATGTTGCAAT GCCTGAAGGC TTTGCGCTGG ATCAGCCGCT TTCTCCGTTC
TTGCTCGCAG CTTTGGAACT TCTTGACCCA GAATCTCAAA GCTATGCGCT TGACGTAATT
TCTATGGTTG AAGCAACTTT AGATGACCCT AAGCCTGTTC TTCGCGCGCA GGAGCGTAAG
GCTCGCGATG CTGCAATGGC TGGAATGAAA GACGATGGCG TTGACTACGA GGAGCGCATG
GAACGCTTGG CGGAAGTCAG TTACCCTAAG CCTCTTGAAG ATTTGCTTGA GCCTGCTTTT
GCGCAATATC GCAAGGATGT TCCTTGGGCA AACGACTACT GGATTAAGCC TAAATCTGTG
CTTCGAGACA TGGTTGAAAC TGCTTCCGAT TTTACTGGAT ATATTTCGCG CTATGGCATT
GCTAGAAGTG AGGGAACGCT TCTTCGCTAT CTTTCGGACG CTTACCGTTC GCTTGCTCGC
ACTGTGCCAG AAGATATGTT TAACGAAGAA TTGCGTGACA TTATTTCGTG GCTTCGTCTT
GTTGTGCGCT CTATTGATTC TAGTCTTGTT GACGAGTGGG AGAGTGCTGG AGGATCGGAT
GCTGAAGCTA GCGCTGTAAC TACGGCTGCG CCTTCAACTT CTGAGTCTGT AGTTGAGGAT
CGTCGTGGAC TTATTGTGTT GATTAGAAAC GCAATGTTTC GTCGCGTGCA GCTTATGGAT
TTGGAAGATG CGGATACTTT AGGAGAGCTT GACAAGGCTT GGGGTTACGG AGTTCACGAG
TGGAATGATG TTCTTGACGA TTACTACGAC GAGCACGAGT ATGTTGGAAT AGATGCCAAG
GCTCGAAGTG GCGACTTGTT TATTTTGGAT GATTCGCTTG AGAAGAGTGA ACATTCGTGG
AAAGTTCGGC AGATAATCGA CGATTCAGAC GGGGATCATA ATTGGGCTAT TACTGGCGTT
GTCGATTTAG ATACAACGCA AGATGAAGGT GAAGTTGTGT TCTTCGATTA CCAAGTTTCG
CACGTGTGA
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| Protein sequence | MAGLSELAFD LHHASEDEIF QAFVDWVKDN KHVDLWPHQE ESIMDLLAGD HVILNTPTGS
GKSLVALGMH FTALATGRRS YYTAPIKALV SEKFFDLVAI FGRDNVGMIT GDSHINADAP
IICCTAEILA NQALREGVNA EVDCVAMDEF HYYGDPERGW AWQVPLLTLP NTQFLLMSAT
LGDVTDIAER LEKSTKRNVD IIADAPRPIP LEYEYTDKPL ATTVELLFNK GLTPIYVVHF
SQDAALETAQ ALASTGVSSK EQRDKIAQAI KGTKFTTGFG KILQRLLRTG VGVHHAGMLP
RYRRLVEQLA QQGLLPVICG TDTLGVGINV PIHSVVLTAL TKFDGNRSRK LRAREFHQIA
GRAGRMGFDT EGLVVAEAPE FEIENARAVA KAGNDPKKLK KVKRKKAPEG FVVWGEPTFT
KLIESAPETL NPHMVVTHSM ILNEVTQGGD ARARVEKLIE DSAQKPQDKE KLLERCNDIF
QTLLDTQVIE SKKRANGSCN YELDVAMPEG FALDQPLSPF LLAALELLDP ESQSYALDVI
SMVEATLDDP KPVLRAQERK ARDAAMAGMK DDGVDYEERM ERLAEVSYPK PLEDLLEPAF
AQYRKDVPWA NDYWIKPKSV LRDMVETASD FTGYISRYGI ARSEGTLLRY LSDAYRSLAR
TVPEDMFNEE LRDIISWLRL VVRSIDSSLV DEWESAGGSD AEASAVTTAA PSTSESVVED
RRGLIVLIRN AMFRRVQLMD LEDADTLGEL DKAWGYGVHE WNDVLDDYYD EHEYVGIDAK
ARSGDLFILD DSLEKSEHSW KVRQIIDDSD GDHNWAITGV VDLDTTQDEG EVVFFDYQVS
HV
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