Gene HMPREF0424_0823 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0823 
Symbol 
ID8709967 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp931480 
End bp932049 
Gene Length570 bp 
Protein Length189 aa 
Translation table11 
GC content38% 
IMG OID646482923 
Producthypothetical protein 
Protein accessionYP_003374040 
Protein GI283783286 
COG category[S] Function unknown 
COG ID[COG3601] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCATTT CTAATACAAA TAATCACCAA ACTTATGCAA AGAACTCTAA CTGGTCTAGC 
GAAAAAATAG CAAAATACGC TCTATTCGTG GCACTTTCAA TGGCTGTAAG TTTCATAGAA 
TTTCCACTTA TTCCAGACTT GTCGTATTTA AAATATGATC CTTCAGGAAT AGTATGCCTA 
GTTGCAGGAT TCGCATATGG TCCTGCAGCT GCAGCAATAG TAAGCATACT AGGTTTCGCA 
CCGCACTTAT TTACCAATCC ACTAGGCACA GTTATGGCAG TGCTAGTATC TTTAGGAGCT 
AGCGTCACAG CGGCATTAAT TTACAAAAAA ATGCATACCA GAAAAGGCGC AATAATCGGA 
CTTTTGGCAG GATCAATTAT TGCTATTGCT CTTGCAATAG CTGGAAATCT TGTTATTACG 
CCACTTTATG CTCACATGAC TGTTTCACAG GTTGTGGCTC TTATTATTCC AGCACTGCTA 
CCGTTTAATA TTATTAAACT TGCACTTCAC GTTGTAGTAA CTATGCTTAT TTACAAACCA 
ATTTCCAACC TGCTACACGA AAATAAATAA
 
Protein sequence
MGISNTNNHQ TYAKNSNWSS EKIAKYALFV ALSMAVSFIE FPLIPDLSYL KYDPSGIVCL 
VAGFAYGPAA AAIVSILGFA PHLFTNPLGT VMAVLVSLGA SVTAALIYKK MHTRKGAIIG 
LLAGSIIAIA LAIAGNLVIT PLYAHMTVSQ VVALIIPALL PFNIIKLALH VVVTMLIYKP 
ISNLLHENK