Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0746 |
Symbol | |
ID | 8709075 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 843659 |
End bp | 843991 |
Gene Length | 333 bp |
Protein Length | 110 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 646482851 |
Product | toxin-antitoxin system, toxin component, RelE family |
Protein accession | YP_003373973 |
Protein GI | 283783219 |
COG category | [R] General function prediction only |
COG ID | [COG3668] Plasmid stabilization system protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.00000000854899 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAGCACAA CCTATAGCGT CATTTATTCT CCGCAAGCGT TCCTTGATCT TACAGAACTA TACGAATACA TTCGCTTTAC ATTACAAGTT CCAAAAACAG CTGAAAAACA AGTCAACCGC ATTAAGAATG CTATCCGTTC TCTTAACACT ATGCCTATGC GCTATCAGCT TGTAGAGTGG GAGCCGTGGC ATTCTATGGG AATACGCAGA GTTTCAGTCG ATAACTACAC AGTTTTTTAC CAAGTAGACG AAAACCAAAT GACTGTAACA GTTATTCGTA TCTTCTACTC AGGCAGAAAT ATTGAAAACA TTGTTAACGA CTCAAACAAT TAA
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Protein sequence | MSTTYSVIYS PQAFLDLTEL YEYIRFTLQV PKTAEKQVNR IKNAIRSLNT MPMRYQLVEW EPWHSMGIRR VSVDNYTVFY QVDENQMTVT VIRIFYSGRN IENIVNDSNN
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