| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0717 |
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| Symbol | groL |
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| ID | 8709844 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 812963 |
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| End bp | 814588 |
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| Gene Length | 1626 bp |
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| Protein Length | 541 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646482822 |
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| Product | chaperonin GroL |
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| Protein accession | YP_003373944 |
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| Protein GI | 283783190 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0459] Chaperonin GroEL (HSP60 family) |
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| TIGRFAM ID | [TIGR02348] chaperonin GroL |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.514239 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAAGA TTATTGCCTA CCAGGAAGAC GCCCGTCAGG GTATGCTCGC CGGTTTGGAT
AAGCTTGCAG ACACTGTTAA AGTTACACTT GGTCCAAAGG GTCGCAACGT TGTATTAGAT
AAGACTTACG GTGCACCAAC TATCACAAAT GATGGCGTTT CTATCGCTAA GGAAATCGAT
CTTGAAGATC CATACGAGCG TATTGGCGCC GAACTTGTTA AGGAAGTAGC TAAGAAGACT
GATGATGTTG CAGGCGACGG TACTACAACT GCTACTGTTT TGGCACAGTC TTTGGTGCAT
GAAGGTTTGA AGAATGTTGT TGCAGGAAGC AACCCAATCG CTCTTCGCCG CGGCATCGAA
AAGGCTGCTG AAGCAATCGT CAAGGAATTG CTTGCTTCTG CAAAGGATGT TGAGACCAAG
GAACAGATTG CTGCTACTGC TACGATTTCT GCAGCTGATC CTGAAGTTGG CGAAAAGATC
GCTGAAGCTT TGGATAAGGT CGGTCAGGAT GGTGTTGTCA CAGTTGAAGA CAACAACAAG
TTTGGTCTTG ACTTGGACTT CACTGAAGGT ATGCGCTTTG ATAAGGGCTA TATTTCCCCT
TACTTCGTCA CTAACGCTGA CGATCAAACT GCTGTTCTTG AAGATCCATA CATTTTGCTC
ACTTCTGGCA AGGTTTCAAG CCAGCAGGAT ATTGTCCACA TCGCTGAGCT TGTTATGAAG
TCTGGCAAGC CATTGCTTAT TATTGCTGAA GATGTTGATG GTGAAGCATT GCCAACACTT
GTTTTGAACA AGATTCGTGG CACTTTCAAC ACTGTTGCTG TTAAGGCTCC AGGATTTGGC
GATCGTCGTA AGGCTATGCT CCAAGATATG GCTATTTTGA CCGGTGCACA GGTTGTTTCT
GACGACCTTG GCTTAAAGCT CGATTCTATC GACGCTTCTG TGTTTGGTCA CGCAGCTAAG
GTTATTGTTT CTAAGGATGA AACAACTATC GTTTCTGGTG CTGGATCTAA GGAAGATGTT
GATGCTCGCG TGGCTCAGAT TCGCGCAGAA ATCGAGAACA CTGATTCCGA TTACGATCGC
GAAAAGCTTC AGGAGCGTCT TGCTAAGCTT GCTGGCGGCG TTGCTGTTAT TAAGGTTGGC
GCTGCTACTG AAGTTGAAGC TAAGGAGCGT AAGCATCGTA TTGAAGATGC AGTTCGTAAC
GCTAAGGCTG CTATTGAGGA AGGTTTGCTT CCAGGCGGTG GCGTAGCTTT GGTTCAGGCT
GCTGCAAAGA TTGAAAAGTC TCAAGCAATC ACAGAGCTTA AGGGCGAAGA AGCGACGGGT
GCTGCAATCG TGTTCCGCGC TGTAGAAGCT CCAATCAAGC AGATTGCTCA GAACTCTGGC
GTTTCTGGAG ATGTTGTGCT CAACAAGGTG CGTGAGCTTC CAGAAGGCGA AGGCTTCAAC
GCTGCAACCA ACACTTACGA AGATTTGATG GCTGCTGGCG TTACTGACCC AGTTAAGGTA
ACTCGTTCTG CTCTACAGAA CGCTGCTTCT ATTGCAGGTT TGTTCTTAAC CACTGAAGCT
GTGGTTGCTA ACAAGCCAGA AAAACCAGCT GCAGCACCAC AAGCTGGTGC CGACATGGGC
TACTAA
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| Protein sequence | MAKIIAYQED ARQGMLAGLD KLADTVKVTL GPKGRNVVLD KTYGAPTITN DGVSIAKEID
LEDPYERIGA ELVKEVAKKT DDVAGDGTTT ATVLAQSLVH EGLKNVVAGS NPIALRRGIE
KAAEAIVKEL LASAKDVETK EQIAATATIS AADPEVGEKI AEALDKVGQD GVVTVEDNNK
FGLDLDFTEG MRFDKGYISP YFVTNADDQT AVLEDPYILL TSGKVSSQQD IVHIAELVMK
SGKPLLIIAE DVDGEALPTL VLNKIRGTFN TVAVKAPGFG DRRKAMLQDM AILTGAQVVS
DDLGLKLDSI DASVFGHAAK VIVSKDETTI VSGAGSKEDV DARVAQIRAE IENTDSDYDR
EKLQERLAKL AGGVAVIKVG AATEVEAKER KHRIEDAVRN AKAAIEEGLL PGGGVALVQA
AAKIEKSQAI TELKGEEATG AAIVFRAVEA PIKQIAQNSG VSGDVVLNKV RELPEGEGFN
AATNTYEDLM AAGVTDPVKV TRSALQNAAS IAGLFLTTEA VVANKPEKPA AAPQAGADMG
Y
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