Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0714 |
Symbol | |
ID | 8709751 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 810035 |
End bp | 811168 |
Gene Length | 1134 bp |
Protein Length | 377 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 646482819 |
Product | ATPase family associated with various cellular activities (AAA) |
Protein accession | YP_003373941 |
Protein GI | 283783187 |
COG category | [R] General function prediction only |
COG ID | [COG0714] MoxR-like ATPases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.669809 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCTCTTA TGGCATTATT TCCACCGCAA CCACAGAAGA AACCGTTAAC CGATAAAACT TCAATTGCTT CTAAGCTTGG CATTGGATCA GCTGTACCTC AGCCGTCTGC TGTTTCTAAT ACAAGTGCGC AAGTCACTGC AACTATTTCG AGTGATGACA TACGTCGTTG CCAACAAATT GCAAATATTT TGCGCGCACG TTTTGCACAA ACCTTAGTCG GTCAAGACGC TTTACGAGAG TCTCTTATTC TTACTCTTAT TGCAGGCGGA CACATTCTTA TTGAATCAGT ACCAGGTCTC GCAAAAACTA CTGCTGCTCA AACTCTTGCA ACAGCTATGT CAGGTAGTTT CCGTCGTGTG CAGTGTACTC CGGATTTAAT GCCAGCAGAT TTAGTTGGTA CTCAAGTTTT TGATTTTGCT TCCCAACATT TTACTACGCA AATTGGTCCT ATCCATGCAA ATGTTATTTT GTTGGATGAG ATTAATCGTT CAAACGCAAA AACTCAATCT GCAATGCTTG AAGCTATGGC AGAAGGAGCA ACAACTATTG GAGGCGAAAG AATTCCTCTG CCTCAACCAT TTATGGTTAT TGCTACGCAA AATCCAATTG AGGAAGAAGG AACATTTAAT CTTCCAGAAG CCCAGATGGA TCGTTTTATG GTAAAAGCAG TTATGACTTA CCCTAATCCT GACGAGGAAG TTCGTATGCT GCAATTACTT ACTCAACGAG GATTGGATGT CGTTGATCCT TCAAAGCTAA ATACTCAACG CATAAGTTTG CAAGATGTTG TTTTTATGCG TACTGCAGCG CGTCACATAC ACGTTTCTGA AGCAGTTATG AAGTATGTAG TTGATCTTGT TGCCACTTCT CGCGGTGAAG GTACGCATCC ACTTCCTACG ATTAATTCAT TGGTTCGTAT GGGAGCTAGC CCTCGTGCAT CAATTGCACT TATTCGTATT GCTCAAGCTC ACGCTTTACT TTCTGGACGC GATTATGTGA TACCTGAAGA TATTAAATTG TTTGCGCATG AAGTGTTAAG GCATCGCATA CTTTTAACTT TTGAAGCTTT AGCTGATTCT ATTACTACAG ATCAAGTAAT TGATGCATTA GTTAAGACGG TTCCTGTGCC ATGA
|
Protein sequence | MSLMALFPPQ PQKKPLTDKT SIASKLGIGS AVPQPSAVSN TSAQVTATIS SDDIRRCQQI ANILRARFAQ TLVGQDALRE SLILTLIAGG HILIESVPGL AKTTAAQTLA TAMSGSFRRV QCTPDLMPAD LVGTQVFDFA SQHFTTQIGP IHANVILLDE INRSNAKTQS AMLEAMAEGA TTIGGERIPL PQPFMVIATQ NPIEEEGTFN LPEAQMDRFM VKAVMTYPNP DEEVRMLQLL TQRGLDVVDP SKLNTQRISL QDVVFMRTAA RHIHVSEAVM KYVVDLVATS RGEGTHPLPT INSLVRMGAS PRASIALIRI AQAHALLSGR DYVIPEDIKL FAHEVLRHRI LLTFEALADS ITTDQVIDAL VKTVPVP
|
| |