| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0706 |
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| Symbol | |
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| ID | 8708842 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 799869 |
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| End bp | 802304 |
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| Gene Length | 2436 bp |
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| Protein Length | 811 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 646482811 |
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| Product | hypothetical protein |
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| Protein accession | YP_003373933 |
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| Protein GI | 283783179 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0392] Predicted integral membrane protein |
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| TIGRFAM ID | [TIGR00374] conserved hypothetical protein |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.778922 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATCTA GCATAAATCC AAATCTTGTT ATTGAAGATA CTCAGCCTAG CTTAGTACGT
AGTTGGGCTG ATTTGTTGTA TGCAATATCA TCAGTTGTAA TTGGCGTTTT TACTTTGTTG
TCGTCAATGT GTTTATCAGC AACGGCTGAT GCTATGAAGA TTGATGCACG AAGTGCTACT
CAAATTATAG GATTATCTTT TAATAATCTT TCATTTGTTC TGATACAGCA AGGTCTTACT
CTTATTGTTG TTGCAGAAGT TATTGCACAC ATGGTTTCTG ACAGGCGTTG GATTGATACC
GCTATTTCTG TTATTACGCT GTTTATAAGT TATGGTTCAG TATGGCTGTT ATCTATTGCG
ATATTTTCTA CACACAATAT AGCTTTGATT GAATCTTTAC AAATGCGGTC TAATAACACT
TGGGCTGATT TGCTTCCAGA CATGTATGCT GTTCTGGTTG CTTTTCTTAC AGTTAGTGGT
CCTAGACGCG AATATAAGCA TGTAATGTGG GGCTGGAATG CTTTATTCAT TGTTACAGCA
ATACTTCTAT TTTCATCTTG GGATTCCTAC TCTGCTATTC TTGTATCATG TTGCTTAGGA
AGAGCAATTG GTACGCTTAT TCGTTTCGCA AAAGGCACAC GCAGTAAGGG TGCTTGGGGT
GACGATATTG TTCTTGCTTT AAAAAATATT GGCATAGATA ATCTTACTCA ATTAACTCGT
AGAACTCAGC AAGCTGATCA TACTGGAGTT CTTCGTTCAA GTCTTGATGA CGATTTAATT
GAAAATTCAA GATTGTATGA TGCAACAGAC ATCCACGGCA TACGTTATGT AATTTCAGTA
TTAGATAATC AAGTTCATTT ACCAGGTTAT TTAAATCAAT TATGGCAGTG GGTGCGTTTA
GTAGATATAC CAACTCGTAG AGATCGTTCT GCTAGACATT CTGTTCATCA CCACCTTTCT
ATGCTTCTTG TTTTACGAAA TATGCATTTG CCAACAGCGA ATGTTTATGG AGTAAGCGAC
AGTGATAAAT CTTCAATAAT GGTTTTTCAC GCTTCTAACG CTCTACTGCC TTGCAATTTG
AACACTTTAA CTATTGATGA TGCAGCAAAA TTAATGCGTT ATGTAGATGC TGCTAACACT
CGCGGTATTA CGCATAGACG CATCACTCCT GAAACTATTG CTAGGCTTGA AGACGGAACA
CCAGTTATTG CAGGTTGGCA AAACGGCGAC GTTGCCAGCG ATGATACAAA TATTGCACTT
GATAAAGTTC AGCTTTTAAC GCTTATTGCA TCTTGCACAG ATATTGACAC TGCTCTTAAA
GCTGCTATTA ACACATGGGG TGCAGAAAAG TTATCTGCAC TATTGCCTTT TATGCAGAAA
GCTGCTATTC CTGCTTCCAC GAGATCTTTG CCATCTTGGA ATAAAAAAGT TTTCCAAAAT
CTTTGCAATA AGTTAAGTCA AATAGTTGCT TTACACACAG ATGAAGAAGA TTATGATACT
GTGCGTTTAG CGCGCTTCAA TATACGTTTC TTTGTTAGCT TGGTTCTTTC GATTGTTGCT
GTCGCTGTTA TTACTACACA GTGGCATCCT CAGGAAGTAT TTGCTGCCTT GCGTCACGCA
GATAATGTAA TGGTATTTAT GTGCTTTGCT TGCAGCATGT TTGCTTGGAT TGGATCTGCA
ATTACTCTCG GCTCATTCAT GGATGATCAA AAACCTTCTG CACATGTTTT GTTTGCATCT
CAAGCAGCTA CTGGTTTCAC AGCAGTTTCT ATGCCTGCTG GTGTTGGTCC TGCATTTGTA
AATATGCAAT TATTAAAGAA AAGCGGGTAC ACTTCAGCTC AAGCTACAGC AATTACTAGT
GCAGTATGGC TTATTCAAGC ATTAATGACA ACTTTAGTAT TACTTTCTAT AGGCGTTTTC
ACTGGTAAAA ATGTGCTTTC TGGAATGATT CCTACTCATA TGCTCATTAC TTTCATTGGA
ATAATCACAC TTATAGTTTG TGTTTTAATG GTTATTCCGT CCGCTCGTAA AGCAATTCGA
AAGCATTATT TGCCAATATT ATCTGATTAC GGCCATCAAA TTAAGGAACT TATTTCACAT
CCTATGCAAC TTATTGCAGG CTCTTTTGGT GCTATTGTGC TTGTTTCATG CATTGGATTG
GGTTATTGGA TTTCTTTGCT TGCATTTGGA TATTACGCAA ATCCTTGGGA AACAATCTTA
CTATTCTTAC TTGCTAACGC TGCTGGATCG GCAGTGCCTA CGCCAGGCGG CTTGGGTGCT
GTTGAAGCTT CTCTTACTTT CGCATTTACA TCTGTAGGTG TTCCTCCAAC AGTTGCTTTG
TCTGCCACTC TTCTGTATAG GCTTATGTTC TACTGGTTGA GAATTCCGTT AGGCGCGTTT
GCAATGAAGT GGCTCAGCAA TAATGAGCTT ATATAA
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| Protein sequence | MQSSINPNLV IEDTQPSLVR SWADLLYAIS SVVIGVFTLL SSMCLSATAD AMKIDARSAT
QIIGLSFNNL SFVLIQQGLT LIVVAEVIAH MVSDRRWIDT AISVITLFIS YGSVWLLSIA
IFSTHNIALI ESLQMRSNNT WADLLPDMYA VLVAFLTVSG PRREYKHVMW GWNALFIVTA
ILLFSSWDSY SAILVSCCLG RAIGTLIRFA KGTRSKGAWG DDIVLALKNI GIDNLTQLTR
RTQQADHTGV LRSSLDDDLI ENSRLYDATD IHGIRYVISV LDNQVHLPGY LNQLWQWVRL
VDIPTRRDRS ARHSVHHHLS MLLVLRNMHL PTANVYGVSD SDKSSIMVFH ASNALLPCNL
NTLTIDDAAK LMRYVDAANT RGITHRRITP ETIARLEDGT PVIAGWQNGD VASDDTNIAL
DKVQLLTLIA SCTDIDTALK AAINTWGAEK LSALLPFMQK AAIPASTRSL PSWNKKVFQN
LCNKLSQIVA LHTDEEDYDT VRLARFNIRF FVSLVLSIVA VAVITTQWHP QEVFAALRHA
DNVMVFMCFA CSMFAWIGSA ITLGSFMDDQ KPSAHVLFAS QAATGFTAVS MPAGVGPAFV
NMQLLKKSGY TSAQATAITS AVWLIQALMT TLVLLSIGVF TGKNVLSGMI PTHMLITFIG
IITLIVCVLM VIPSARKAIR KHYLPILSDY GHQIKELISH PMQLIAGSFG AIVLVSCIGL
GYWISLLAFG YYANPWETIL LFLLANAAGS AVPTPGGLGA VEASLTFAFT SVGVPPTVAL
SATLLYRLMF YWLRIPLGAF AMKWLSNNEL I
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