| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0694 |
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| Symbol | |
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| ID | 8709037 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 785798 |
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| End bp | 786979 |
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| Gene Length | 1182 bp |
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| Protein Length | 393 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646482799 |
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| Product | transporter, major facilitator family protein |
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| Protein accession | YP_003373921 |
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| Protein GI | 283783167 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0738] Fucose permease |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTAACC TTCTTCTTGC TGTTATTTAT CTTGCTTTTA TAAGCTTGGG TTTGCCGGAT
GCTCTTCTTG GAGCTGCGTG GCCTACGATG AGTCATGATG TTGGTGCGCA AATTTCTTGG
GCTGGTGGAA TATCAATGGT TATTTCTGCA GGAACAATTG TTTCTGCGCT GCTATCTAAT
AGGTTTACGC ATAAGTTTGG CCCTGGGAAG GTTACGCTTA TTTCAGTTGC TTTAACAGCT
TTAGCGTTAC TAGGTTTTTC TTTTGCTCCG AATTATCTTG TGCTTATTTT TCTAGCTATA
CCATACGGTT TAGGTGCTGG AGGAGTGGAT GCGGCTCTTA ATAATTACGT TGCAATTCAC
TATGAAAGCT GGCACATGAG CTGGCTTCAC TGCATGTGGG GAATTGGTGC TTCCGCAGGT
CCTTATGTTA TGGGTTTCGC ACTTTCTCAC GGTCAGCGCT GGCCTGCAGG CTACCAGTAT
ATTGCTGTTA TACAAATTGC TCTCACTCTT GTGTTATTCA TAAGTTTGCC GCTGTGGAAA
AATAATAATA AAAAGGCAGA GACGCATAAT CTTACTGAGG TAAAGAAACA ATCTTCTGGG
ATGCTATCTT ACGCAGAAGT TTTGCGCATT CCAGGAGCTA AGAATATTCT TATTATGTTC
TTTTGCTATT GTGCGTTGGA GCAAACTGCA GGATTGTGGG CTAGTAGTTA CATGGTTTTG
CATGGAGGAG TTAGCCGCAT TGTTGCGGCA GGTTGGGCAA GCTTGTTTTA TGTTGGCATT
ACAGTTGGTC GTTTTGTAAG CGGATTTCTT ACTATGCGTT TTAACGATGC AACGATGATT
CGTATTGGGC AGTGCGTAAT GCTTATGGGC ATTCTAGTAT TGTTGCTGCC TTTGCCGAAT
CATATTGAGC TTATTGCAGG ATTTGTAATT ATTGGACTAG GCTGCGCTCC AGTTTACCCA
TGCATTATTC ATTCCACGCC GCATTATTTT GGTGCAGATA AGTCTCAAGC TATTGTTGGC
ATGCAAATGG CAAGCGCATA TATTGGGTCT ATGGTAATGC CTGCGATTTT TGGACTAATT
GCGCAGAATG TTTCTATGGT GCTTCTTCCG GCTTATTTGC TTATTCTTCT CGCTGTAATG
ACTTTTATGC ACGTGCGCTT GCTTCGAACT TGCGAAAGTT GA
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| Protein sequence | MINLLLAVIY LAFISLGLPD ALLGAAWPTM SHDVGAQISW AGGISMVISA GTIVSALLSN
RFTHKFGPGK VTLISVALTA LALLGFSFAP NYLVLIFLAI PYGLGAGGVD AALNNYVAIH
YESWHMSWLH CMWGIGASAG PYVMGFALSH GQRWPAGYQY IAVIQIALTL VLFISLPLWK
NNNKKAETHN LTEVKKQSSG MLSYAEVLRI PGAKNILIMF FCYCALEQTA GLWASSYMVL
HGGVSRIVAA GWASLFYVGI TVGRFVSGFL TMRFNDATMI RIGQCVMLMG ILVLLLPLPN
HIELIAGFVI IGLGCAPVYP CIIHSTPHYF GADKSQAIVG MQMASAYIGS MVMPAIFGLI
AQNVSMVLLP AYLLILLAVM TFMHVRLLRT CES
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