Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0622 |
Symbol | aroA |
ID | 8710077 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 689796 |
End bp | 691181 |
Gene Length | 1386 bp |
Protein Length | 461 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 646482731 |
Product | 3-phosphoshikimate 1-carboxyvinyltransferase |
Protein accession | YP_003373856 |
Protein GI | 283783102 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0128] 5-enolpyruvylshikimate-3-phosphate synthase |
TIGRFAM ID | [TIGR01356] 3-phosphoshikimate 1-carboxyvinyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTAATCG ATAGTATTCA TAGTATGAGT GATATTAACG ATATTGCAGA TTGCACTACT CCTTGGAAAG CACCGTATGC TAATCATCAA TTAAAAGCTT ATATTGAGGT TCCTGGCAGT AAATCTTTGT CGAATCGTTA TTTAATTTTG GCAGCTTTGG GCACAAAATC AGTAGTTTTA CAAGGATTGT TGCGCTCGCG CGACACGGAG CTTATGATTA ACGCTTTATC TACATTTGGC GTTAGATGTG AGTCATTAAA TGAAGATGGA ACTAAGCTTC GTGTAATTCC TCCAGAAGAC GGAATTTTTA GGGTTCCAGA TAATGCTGAA GTGTATTGCG GTTTAGCTGG AACTGTAATG CGTTTCGTTG CAGCTTTAGC TTTATTTGCA AATAAAGCTG TGCGATTTGA TGGCGATAAG CAAGCTTATG CTCGTCCTAT GAAGCCAGTT CTTGACGGTT TAGAGCAGCT TGGTGCTCGC GTAAAATATC ACGAAGAAGA GGGTTTTTTA CCTTTTACTA TTACGCCACC TTCAGTCGAA TTTAAAATAA ATAATTTTTC TGAAAAAATC GTGCAAATTG ATTCTTCTTC ATCATCACAA TTTATTTCTG CGCTGCTTCT GATTGGTTCA CGTATTCCTG GTGGATTAGA GCTTAAACAT ATTGGTGACA CATTACCAAG TATGCCGCAT ATTCGCATGA CTATGGACGA TATTTGCAAA GCGGGTGGGA TTGTAAATAT GACTAGCAAC GCAATGTGGC ATGTTAAAGA GAGCAAAATA AATCTAGCTA ACGTTGTTAC TATAGAGCCT GATCTTTCTA ATGCTGCGCC ATTTTTAGGA GCATCATTGA TTGCTGGAGG AAGTGTCAGT ATACCTAATT GGCCGTTTTC TTCAACTCAA CCTGGAGGAT TGCTTCCTGG AATATTAGAG ACAATGTGCG CAAAAGTTAG TTTTGAAAAA ACAAGCGATG ACGCTGGAAT AATGCATGTG GAAAGCGATG GTGCGATTAA AGCAATTCCG TATCTTGATT TGAGCGCAGC AGGGGAGATT GCTCCTAGTA TTGCAGCTAT TCTTGCTTTT GCGGACGGTC CAAGTGAACT TCATGGTATC GCGCATTTGA GAGGGCATGA AACGAATCGT TTGCAAGCGT TAGTTAATGA ATTGAATCGA GTTGGGATTG GCGCTAAAGA GCTCGAAGAT GGCATTCGTA TTGAGCCAAG TAATCATATG CATGGGGAAG TAATGGAAAC TTATGCGGAT CACAGAATGG CAACTTTTGC TGCAATGCTT GGATTGCGCA TAGAAAATAT AAGAATCAAA AATATTTCTA CTACTCGCAA AACGATTCCT GATTTTCCAG GCATGTGGCA TAAAATGCTT GAATAA
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Protein sequence | MLIDSIHSMS DINDIADCTT PWKAPYANHQ LKAYIEVPGS KSLSNRYLIL AALGTKSVVL QGLLRSRDTE LMINALSTFG VRCESLNEDG TKLRVIPPED GIFRVPDNAE VYCGLAGTVM RFVAALALFA NKAVRFDGDK QAYARPMKPV LDGLEQLGAR VKYHEEEGFL PFTITPPSVE FKINNFSEKI VQIDSSSSSQ FISALLLIGS RIPGGLELKH IGDTLPSMPH IRMTMDDICK AGGIVNMTSN AMWHVKESKI NLANVVTIEP DLSNAAPFLG ASLIAGGSVS IPNWPFSSTQ PGGLLPGILE TMCAKVSFEK TSDDAGIMHV ESDGAIKAIP YLDLSAAGEI APSIAAILAF ADGPSELHGI AHLRGHETNR LQALVNELNR VGIGAKELED GIRIEPSNHM HGEVMETYAD HRMATFAAML GLRIENIRIK NISTTRKTIP DFPGMWHKML E
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